KEGG   Trichomonas vaginalis: TVAG_2v0569180
Entry
TVAG_2v0569180    CDS       T01022                                 
Name
(RefSeq) RNA polymerase ii, chain L domain-containing protein
  KO
K03009  DNA-directed RNA polymerases I, II, and III subunit RPABC4
Organism
tva  Trichomonas vaginalis
Pathway
tva03020  RNA polymerase
tva03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tva00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TVAG_2v0569180
  09124 Replication and repair
   03420 Nucleotide excision repair
    TVAG_2v0569180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tva03021]
    TVAG_2v0569180
   03400 DNA repair and recombination proteins [BR:tva03400]
    TVAG_2v0569180
Transcription machinery [BR:tva03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     TVAG_2v0569180
  RNA polymerase III system
   RNA polymerase III
     TVAG_2v0569180
  RNA polymerase I system
   RNA polymerase I
     TVAG_2v0569180
DNA repair and recombination proteins [BR:tva03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      TVAG_2v0569180
SSDB
Motif
Pfam: DNA_RNApol_7kD zf-ribbon_3 Anti-TRAP zf-C2HC5 HypA TF_Zn_Ribbon Zn-ribbon_8 zinc_ribbon_2 OrfB_Zn_ribbon zf-NADH-PPase zf_UBZ zf-C4_Topoisom RNHCP zinc-ribbon_6 HVO_2753_ZBP zf-RRN7 RUBY_RBDX DZR C1_1 GFA Auto_anti-p27 Zn_ribbon_SprT Zn_Tnp_IS1595 zinc_ribbon_9 Sgf11 DUF2072 Zn_ribbon_recom
Other DBs
NCBI-GeneID: 4760778
NCBI-ProteinID: XP_001315161
UniProt: A2EWQ0
LinkDB
Position
II:18870321..18870601
AA seq 47 aa
MVVVEYNCSNCGKTVRAEDRGAMRCPQCGCNILYKKRTTKRITFSAR
NT seq 144 nt   +upstreamnt  +downstreamnt
atggttgttgttgaatacaattgctcaaactgcggcaagactgtcagagctgaagaccgc
ggtgcaatgcgttgcccacagtgcggctgcaacattctctacaagaagagaacaacaaag
cgtatcacattcagtgctagataa

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