KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:plh00010 plh01200 plh01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:plh00010 plh01200 plh01230 plh01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH:plh00010 plh00020 plh01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:plh00010 plh00020 plh00620 plh00785 plh01200 plh01210 plh01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:plh00020 plh01200 plh01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:plh00020 plh01200 plh01210 plh01230 plh01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:plh00020 plh01200 plh01210 plh01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:plh00030 plh01200 plh01100 plh01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:plh00030 plh01200 plh01100 plh01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:plh00030 plh01200 plh01230 plh01100 plh01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:plh00030 plh00230 plh01200 plh01230 plh01100]

Other carbohydrate metabolism
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH:plh00052 plh01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH:plh00500 plh01100]
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH:plh00500 plh01100 plh01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:plh00280 plh00630 plh00640 plh01200 plh01100]

Energy metabolism
Carbon fixation
M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate [PATH:plh00430 plh00620 plh00720 plh01200 plh01100 plh01120]

Methane metabolism
Nitrogen metabolism
Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:plh00920 plh01320 plh01100 plh01120]

Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:plh00190 plh01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:plh00190 plh01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH:plh00190 plh01100]

Lipid metabolism
Fatty acid metabolism
M00083 Fatty acid biosynthesis, elongation [PATH:plh00061 plh01212 plh01100]

Sterol biosynthesis
Lipid metabolism
Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:plh00230 plh01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:plh00230 plh01232 plh01240 plh01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:plh00230 plh01232 plh01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:plh00230 plh00240 plh01232 plh01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:plh00240 plh01232 plh01240 plh01100]

Amino acid metabolism
Serine and threonine metabolism
M00621 Glycine cleavage system [PATH:plh00260 plh00630 plh00670 plh00785 plh01200 plh01100]

Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH:plh00270 plh00920 plh01320 plh01200 plh01230 plh01100 plh01110]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:plh00290 plh00770 plh01210 plh01230 plh01100 plh01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:plh00290 plh01230 plh01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:plh00290 plh01210 plh01230 plh01100 plh01110]

Lysine metabolism
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH:plh00300 plh01230 plh01100 plh01110]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:plh00220 plh01210 plh01230 plh01100]
M00844 Arginine biosynthesis, ornithine => arginine [PATH:plh00220 plh01230 plh01100]
M00978 Ornithine-ammonia cycle [PATH:plh00220 plh01100 plh01110]
M00015 Proline biosynthesis, glutamate => proline [PATH:plh00330 plh01230 plh01100]
M00970 Proline degradation, proline => glutamate [PATH:plh00330 plh01100]

Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH:plh00400 plh01230 plh01100 plh01110]

Other amino acid metabolism
Glycan metabolism
Nucleotide sugar biosynthesis
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:plh00520 plh01250 plh01100]
M00999 UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA [PATH:plh00520 plh00053 plh01250 plh01100]
M00554 UDP-Gal biosynthesis, Gal => UDP-Gal [PATH:plh00520 plh00052 plh01250 plh01100]
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH:plh00520 plh01250 plh01100]
M00063 CMP-3-deoxy-D-manno-octulosonate biosynthesis, ribulose-5P => CMP-KDO [PATH:plh00541 plh01250 plh01100]
M00793 dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha [PATH:plh00521 plh00523 plh00541 plh01250 plh01100 plh01110]
M01016 GDP-L-Fuc biosynthesis, GDP-Man => GDP-L-Fuc [PATH:plh00541]

Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Other polysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH:plh00760 plh01240 plh01100]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:plh00770 plh01240 plh01100 plh01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:plh00770 plh01240 plh01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:plh00785 plh01240 plh01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH:plh00790 plh01240 plh01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:plh00790 plh01100]
M00140 C1-unit interconversion, prokaryotes [PATH:plh00670 plh01240 plh01100]
M00926 Heme biosynthesis, bacteria, glutamyl-tRNA => coproporphyrin III => heme [PATH:plh00860 plh01240 plh01100]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00616 Sulfate-sulfur assimilation