KEGG Modules

Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH:stek00010 stek01200 stek01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH:stek00010 stek01200 stek01230 stek01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:stek00010 stek00020 stek00620 stek00785 stek01200 stek01210 stek01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH:stek00020 stek01200 stek01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:stek00020 stek01200 stek01210 stek01230 stek01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:stek00020 stek01200 stek01210 stek01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH:stek00030 stek01200 stek01100 stek01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:stek00030 stek01200 stek01100 stek01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:stek00030 stek01200 stek01230 stek01100 stek01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH:stek00030 stek00230 stek01200 stek01230 stek01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH:stek00030 stek01200 stek01100 stek01120]

Other carbohydrate metabolism
M00012 Glyoxylate cycle [PATH:stek00630 stek01200 stek01100 stek01110]
M00982 Methylcitrate cycle [PATH:stek00640 stek00020 stek01200 stek01100 stek01120]

Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH:stek00620 stek00710 stek01200 stek01100 stek01120]

Methane metabolism
Nitrogen metabolism
Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S [PATH:stek00920 stek01320 stek01100 stek01120]

Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH:stek00190 stek01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH:stek00190 stek01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH:stek00190 stek01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH:stek00190 stek01100]
M00153 Cytochrome bd ubiquinol oxidase [PATH:stek00190 stek01100]
M00417 Cytochrome o ubiquinol oxidase [PATH:stek00190 stek01100]

Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation [PATH:stek00061 stek01212 stek01100]
M00083 Fatty acid biosynthesis, elongation [PATH:stek00061 stek01212 stek01100]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH:stek00061 stek00071 stek01212 stek01100]
M00087 beta-Oxidation [PATH:stek00071 stek01212 stek01100]

Sterol biosynthesis
Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH:stek00564 stek01100]

Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP [PATH:stek00230 stek01100]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH:stek00230 stek01232 stek01240 stek01100]
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP [PATH:stek00230 stek01232 stek01100]
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:stek00230 stek00240 stek01232 stek01100]

Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:stek00240 stek01232 stek01240 stek01100]
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:stek00240 stek01232 stek01100]

Amino acid metabolism
Serine and threonine metabolism
M00018 Threonine biosynthesis, aspartate => homoserine => threonine [PATH:stek00260 stek01230 stek01100 stek01110]
M00621 Glycine cleavage system [PATH:stek00260 stek00630 stek00670 stek00785 stek01200 stek01100]

Cysteine and methionine metabolism
M00338 Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:stek00260 stek00270 stek00670 stek01230 stek01100]
M00034 Methionine salvage pathway [PATH:stek00270 stek01100]
M00035 Methionine degradation [PATH:stek00270 stek00670 stek01100]

Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH:stek00290 stek00770 stek01210 stek01230 stek01100 stek01110]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH:stek00290 stek01230 stek01100]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH:stek00290 stek01210 stek01230 stek01100 stek01110]
M00036 Leucine degradation, leucine => acetoacetate + acetyl-CoA [PATH:stek00280 stek01100]

Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH:stek00300 stek01230 stek01100]

Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH:stek00220 stek01210 stek01230 stek01100]
M00845 Arginine biosynthesis, glutamate => acetylcitrulline => arginine [PATH:stek00220 stek01230 stek01100]
M00015 Proline biosynthesis, glutamate => proline [PATH:stek00330 stek01230 stek01100]
M00970 Proline degradation, proline => glutamate [PATH:stek00330 stek01100]

Polyamine biosynthesis
Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH:stek00340 stek01230 stek01100 stek01110]

Aromatic amino acid metabolism
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH:stek00400 stek01230 stek01100 stek01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH:stek00400 stek01230 stek01100 stek01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH:stek00400 stek01230 stek01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH:stek00350 stek01100]

Other amino acid metabolism
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH:stek00480 stek01240 stek01100]

Glycan metabolism
Nucleotide sugar biosynthesis
M00909 UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc [PATH:stek00520 stek01250 stek01100]
M00996 UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc [PATH:stek00520 stek01250 stek01100 stek01100]
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc [PATH:stek00520 stek01250 stek01100]
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc [PATH:stek00520 stek01250 stek01100]
M00999 UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA [PATH:stek00520 stek00053 stek01250 stek01100]
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man [PATH:stek00520 stek00051 stek01250 stek01100]
M00063 CMP-KDO biosynthesis, ribulose-5P => CMP-KDO [PATH:stek00541 stek01250 stek01100]
M00793 dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha [PATH:stek00521 stek00523 stek00541 stek01250 stek01100 stek01110]

Glycan biosynthesis
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Other polysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH:stek00740 stek01240 stek01100 stek01110]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH:stek00770 stek01240 stek01100 stek01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH:stek00770 stek01240 stek01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH:stek00785 stek01240 stek01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH:stek00790 stek00670 stek01240 stek01100]
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine [PATH:stek00790 stek01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH:stek00860 stek01240 stek01100 stek01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH:stek00860 stek01240 stek01100 stek01110]

Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Biosynthesis of other compounds
Xenobiotics biodegradation
Aromatics degradation

Gene set
Pathogenicity
Drug resistance
M00627 beta-Lactam resistance, Bla system [PATH:stek01501]
M00642 Multidrug resistance, efflux pump MexJK-OprM

Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00616 Sulfate-sulfur assimilation