KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate
M00002 Glycolysis, core module involving three-carbon compounds
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA
M00009 Citrate cycle (TCA cycle, Krebs cycle)
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
M00004 Pentose phosphate pathway (Pentose phosphate cycle)
M00006 Pentose phosphate pathway, oxidative phase, glucose-6P => ribulose-5P
M00007 Pentose phosphate pathway, non-oxidative phase, fructose-6P => ribose-5P
M00005 PRPP biosynthesis, ribose-5P => PRPP
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
Other carbohydrate metabolism
Energy metabolism
Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark
Sulfur metabolism
M00176 Assimilatory sulfate reduction, sulfate => H2S
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes
M00149 Succinate dehydrogenase, prokaryotes
M00151 Cytochrome bc1 complex respiratory unit
M00155 Cytochrome c oxidase, prokaryotes
M00153 Cytochrome bd ubiquinol oxidase
M00417 Cytochrome o ubiquinol oxidase
Lipid metabolism
Fatty acid metabolism
M00082 Fatty acid biosynthesis, initiation
M00083 Fatty acid biosynthesis, elongation
M00086 beta-Oxidation, acyl-CoA synthesis
M00087 beta-Oxidation
Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE
Nucleotide metabolism
Purine metabolism
M00048 De novo purine biosynthesis, PRPP + glutamine => IMP
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP
M00050 Guanine ribonucleotide biosynthesis, IMP => GDP,GTP
M00053 Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP
Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP
M00938 Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP
Amino acid metabolism
Serine and threonine metabolism
M00018 Threonine biosynthesis, aspartate => homoserine => threonine
M00621 Glycine cleavage system
Cysteine and methionine metabolism
M00338 Cysteine biosynthesis, homocysteine + serine => cysteine
M00034 Methionine salvage pathway
M00035 Methionine degradation
Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate
M00036 Leucine degradation, leucine => acetoacetate + acetyl-CoA
Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine
M00845 Arginine biosynthesis, glutamate => acetylcitrulline => arginine
M00015 Proline biosynthesis, glutamate => proline
M00970 Proline degradation, proline => glutamate
Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine
Aromatic amino acid metabolism
M00023 Tryptophan biosynthesis, chorismate => tryptophan
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine
M00044 Tyrosine degradation, tyrosine => homogentisate
Other amino acid metabolism
M00118 Glutathione biosynthesis, glutamate => glutathione
Glycan metabolism
Nucleotide sugar biosynthesis
M00909 UDP-GlcNAc biosynthesis, prokaryotes, Fru-6P => UDP-GlcNAc
M00996 UDP-MurNAc biosynthesis, anhMurNAc => UDP-MurNAc
M00995 UDP-MurNAc biosynthesis, Fru-6P => UDP-MurNAc
M00549 UDP-Glc biosynthesis, Glc => UDP-Glc
M00999 UDP-GlcA/GalA biosynthesis, UDP-Glc => UDP-GlcA => UDP-GalA
M01000 GDP-Man biosynthesis, Fru-6P => GDP-Man
M00063 CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
M00793 dTDP-L-Rha biosynthesis, Glc-1P => dTDP-L-Rha
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate
M00120 Coenzyme A biosynthesis, pantothenate => CoA
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H
M00126 Tetrahydrofolate biosynthesis, GTP => THF
M00988 PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme
Signature modules
Gene set
Drug resistance
M00627 beta-Lactam resistance, Bla system
M00642 Multidrug resistance, efflux pump MexJK-OprM
Module set
Metabolic capacity
M00616 Sulfate-sulfur assimilation
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