KEGG PATHWAY: Microbial metabolism in diverse environments

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Pathway modules
- Carbohydrate metabolism
  - Central carbohydrate metabolism
    - M00004 Pentose phosphate pathway (Pentose phosphate cycle)
    - M00006 Pentose phosphate pathway, oxidative phase
    - M00007 Pentose phosphate pathway, non-oxidative phase
    - M00580 Pentose phosphate pathway, archaea
    - M00008 Entner-Doudoroff pathway
    - M00308 Semi-phosphorylative Entner-Doudoroff pathway
    - M00309 Non-phosphorylative Entner-Doudoroff pathway
  - Other carbohydrate metabolism
    - M00630 Galacturonate degradation, fungi
    - M00631 Galacturonate degradation, bacteria
    - M00550 Ascorbate degradation
    - M00373 Ethylmalonyl pathway
    - M00740 Methylaspartate cycle
    - M00982 Methylcitrate cycle
- Energy metabolism
  - Carbon fixation
    - M00165 Reductive pentose phosphate cycle (Calvin cycle)
    - M00168 CAM (Crassulacean acid metabolism), dark
    - M00169 CAM (Crassulacean acid metabolism), light
    - M00172 C4-dicarboxylic acid cycle, NADP - malic enzyme type
    - M00171 C4-dicarboxylic acid cycle, NAD - malic enzyme type
    - M00170 C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type
    - M00173 Reductive citrate cycle (Arnon-Buchanan cycle)
    - M00376 3-Hydroxypropionate bi-cycle
    - M00375 Hydroxypropionate-hydroxybutylate cycle
    - M00374 Dicarboxylate-hydroxybutyrate cycle
    - M00377 Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway)
    - M00579 Phosphate acetyltransferase-acetate kinase pathway
    - M00620 Incomplete reductive citrate cycle
  - Methane metabolism
    - M00567 Methanogenesis
    - M00357 Methanogenesis
    - M00356 Methanogenesis
    - M00563 Methanogenesis
    - M00358 Coenzyme M biosynthesis
    - M00608 2-Oxocarboxylic acid chain extension
    - M00174 Methane oxidation, methanotroph
    - M00346 Formaldehyde assimilation, serine pathway
    - M00345 Formaldehyde assimilation, ribulose monophosphate pathway
    - M00344 Formaldehyde assimilation, xylulose monophosphate pathway
    - M00378 F420 biosynthesis, archaea
    - M00422 Acetyl-CoA pathway
  - Nitrogen metabolism
    - M00175 Nitrogen fixation
    - M00531 Assimilatory nitrate reduction
    - M00530 Dissimilatory nitrate reduction
    - M00529 Denitrification
    - M00528 Nitrification
    - M00804 Complete nitrification, comammox
    - M00973 Anammox
  - Sulfur metabolism
    - M00176 Assimilatory sulfate reduction
    - M00596 Dissimilatory sulfate reduction
    - M00595 Sulfur oxidation, SOX system
    - M00984 Sulfur oxidation, tetrathionate intermediate (S4I) pathway
    - M00986 Sulfur reduction
    - M00985 Sulfide oxidation
    - M00990 Dimethylsulfoniopropionate (DMSP) degradation, demethylation pathway
    - M00991 Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway
    - M00992 Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway
    - M00993 Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway
- Amino acid metabolism
  - Serine and threonine metabolism
    - M00033 Ectoine biosynthesis
    - M00919 Ectoine degradation
  - Lysine metabolism
    - M00956 Lysine degradation, bacteria
    - M00957 Lysine degradation, bacteria
    - M00960 Lysine degradation, bacteria
  - Aromatic amino acid metabolism
    - M00533 Homoprotocatechuate degradation
- Metabolism of cofactors and vitamins
  - Cofactor and vitamin metabolism
    - M00810 Nicotine degradation, pyridine pathway
    - M00811 Nicotine degradation, pyrrolidine pathway
    - M00622 Nicotinate degradation
    - M00836 Coenzyme F430 biosynthesis
- Xenobiotics biodegradation
  - Aromatics degradation
    - M00538 Toluene degradation
    - M00537 Xylene degradation
    - M00419 Cymene degradation
    - M00547 Benzene/toluene degradation
    - M00548 Benzene degradation
    - M00551 Benzoate degradation
    - M00637 Anthranilate degradation
    - M00568 Catechol ortho-cleavage
    - M00569 Catechol meta-cleavage
    - M00539 Cumate degradation
    - M00543 Biphenyl degradation
    - M00544 Carbazole degradation
    - M00418 Toluene degradation, anaerobic
    - M00541 Benzoyl-CoA degradation
    - M00540 Benzoate degradation
    - M00534 Naphthalene degradation
    - M00638 Salicylate degradation
    - M00624 Terephthalate degradation
    - M00623 Phthalate degradation
    - M00636 Phthalate degradation
    - M00878 Phenylacetate degradation
    - M00545 Trans-cinnamate degradation
    - M00915 Caffeine degradation

Microbial metabolism in diverse environments - Halomonas sp. R57-5

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