Microbial metabolism in diverse environments - Rhodothermus marinus DSM 4252

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Rmar_2008

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• Pathway modules
  • Carbohydrate metabolism
    • Central carbohydrate metabolism
      • M00004 Pentose phosphate pathway (Pentose phosphate cycle)
      • M00006 Pentose phosphate pathway, oxidative phase
      • M00007 Pentose phosphate pathway, non-oxidative phase
      • M00580 Pentose phosphate pathway, archaea
      • M00008 Entner-Doudoroff pathway
      • M00308 Semi-phosphorylative Entner-Doudoroff pathway
      • M00309 Non-phosphorylative Entner-Doudoroff pathway
    • Other carbohydrate metabolism
      • M00550 Ascorbate degradation
      • M00373 Ethylmalonyl pathway
      • M00740 Methylaspartate cycle
      • M00982 Methylcitrate cycle
  • Energy metabolism
    • Carbon fixation
      • M00165 Reductive pentose phosphate cycle (Calvin cycle)
      • M00168 CAM (Crassulacean acid metabolism), dark
      • M00169 CAM (Crassulacean acid metabolism), light
      • M00172 C4-dicarboxylic acid cycle, NADP - malic enzyme type
      • M00171 C4-dicarboxylic acid cycle, NAD - malic enzyme type
      • M00170 C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type
      • M00173 Reductive citrate cycle (Arnon-Buchanan cycle)
      • M00376 3-Hydroxypropionate bi-cycle
      • M00375 Hydroxypropionate-hydroxybutylate cycle
      • M00374 Dicarboxylate-hydroxybutyrate cycle
      • M00377 Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway)
      • M00579 Phosphate acetyltransferase-acetate kinase pathway
      • M00620 Incomplete reductive citrate cycle
    • Methane metabolism
      • M00567 Methanogenesis
      • M00357 Methanogenesis
      • M00356 Methanogenesis
      • M00563 Methanogenesis
      • M00358 Coenzyme M biosynthesis
      • M00608 2-Oxocarboxylic acid chain extension
      • M00174 Methane oxidation, methanotroph
      • M00346 Formaldehyde assimilation, serine pathway
      • M00345 Formaldehyde assimilation, ribulose monophosphate pathway
      • M00344 Formaldehyde assimilation, xylulose monophosphate pathway
      • M00378 F420 biosynthesis, archaea
      • M00422 Acetyl-CoA pathway
    • Nitrogen metabolism
      • M00175 Nitrogen fixation
      • M00531 Assimilatory nitrate reduction
      • M00530 Dissimilatory nitrate reduction
      • M00529 Denitrification
      • M00528 Nitrification
      • M00804 Complete nitrification, comammox
      • M00973 Anammox
    • Sulfur metabolism
      • M00176 Assimilatory sulfate reduction
      • M00596 Dissimilatory sulfate reduction
      • M00595 Sulfur oxidation, SOX system
      • M00984 Sulfur oxidation, tetrathionate intermediate (S4I) pathway
      • M00986 Sulfur reduction
      • M00985 Sulfide oxidation
      • M00990 Dimethylsulfoniopropionate (DMSP) degradation, demethylation pathway
      • M00991 Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway
      • M00992 Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway
      • M00993 Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway
  • Amino acid metabolism
    • Serine and threonine metabolism
      • M00033 Ectoine biosynthesis
      • M00919 Ectoine degradation
    • Lysine metabolism
      • M00956 Lysine degradation, bacteria
      • M00957 Lysine degradation, bacteria
      • M00960 Lysine degradation, bacteria
    • Aromatic amino acid metabolism
      • M00533 Homoprotocatechuate degradation
  • Metabolism of cofactors and vitamins
    • Cofactor and vitamin metabolism
      • M00810 Nicotine degradation, pyridine pathway
      • M00811 Nicotine degradation, pyrrolidine pathway
      • M00622 Nicotinate degradation
      • M00836 Coenzyme F430 biosynthesis
  • Xenobiotics biodegradation
    • Aromatics degradation
      • M00538 Toluene degradation
      • M00537 Xylene degradation
      • M00419 Cymene degradation
      • M00547 Benzene/toluene degradation
      • M00548 Benzene degradation
      • M00551 Benzoate degradation
      • M00637 Anthranilate degradation
      • M00568 Catechol ortho-cleavage
      • M00569 Catechol meta-cleavage
      • M00539 Cumate degradation
      • M00543 Biphenyl degradation
      • M00544 Carbazole degradation
      • M00418 Toluene degradation, anaerobic
      • M00541 Benzoyl-CoA degradation
      • M00540 Benzoate degradation
      • M00534 Naphthalene degradation
      • M00638 Salicylate degradation
      • M00624 Terephthalate degradation
      • M00623 Phthalate degradation
      • M00636 Phthalate degradation
      • M00878 Phenylacetate degradation
      • M00545 Trans-cinnamate degradation
      • M00915 Caffeine degradation