KEGG PATHWAY: Metabolic pathways - Theobroma cacao (cacao)

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Pathway modules
- Carbohydrate metabolism
  - Central carbohydrate metabolism
    - M00001 Glycolysis (Embden-Meyerhof pathway)
    - M00002 Glycolysis, core module involving three-carbon compounds
    - M00003 Gluconeogenesis
    - M00307 Pyruvate oxidation
    - M00009 Citrate cycle (TCA cycle, Krebs cycle)
    - M00010 Citrate cycle, first carbon oxidation
    - M00011 Citrate cycle, second carbon oxidation
    - M00004 Pentose phosphate pathway (Pentose phosphate cycle)
    - M00006 Pentose phosphate pathway, oxidative phase
    - M00007 Pentose phosphate pathway, non-oxidative phase
    - M00580 Pentose phosphate pathway, archaea
    - M00005 PRPP biosynthesis
    - M00008 Entner-Doudoroff pathway
    - M00308 Semi-phosphorylative Entner-Doudoroff pathway
    - M00633 Semi-phosphorylative Entner-Doudoroff pathway
    - M00309 Non-phosphorylative Entner-Doudoroff pathway
  - Other carbohydrate metabolism
    - M00014 Glucuronate pathway (uronate pathway)
    - M00630 D-Galacturonate degradation (fungi)
    - M00631 D-Galacturonate degradation (bacteria)
    - M00061 D-Glucuronate degradation
    - M00081 Pectin degradation
    - M00632 Galactose degradation, Leloir pathway
    - M00552 D-galactonate degradation, De Ley-Doudoroff pathway
    - M00129 Ascorbate biosynthesis, animals
    - M00114 Ascorbate biosynthesis, plants
    - M00550 Ascorbate degradation
    - M00854 Glycogen biosynthesis
    - M00855 Glycogen degradation
    - M00565 Trehalose biosynthesis
    - M00012 Glyoxylate cycle
    - M00373 Ethylmalonyl pathway
    - M00740 Methylaspartate cycle
    - M00532 Photorespiration
    - M00013 Malonate semialdehyde pathway
    - M00741 Propanoyl-CoA metabolism
    - M00982 Methylcitrate cycle
    - M00968 Pentose bisphosphate pathway (nucleoside degradation), archaea
    - M00130 Inositol phosphate metabolism
    - M00131 Inositol phosphate metabolism
    - M00132 Inositol phosphate metabolism
    - M01049 Sulfoquinovose degradation, sulfoglycolytic Embden-Meyerhof pathway
    - M01050 Sulfoquinovose degradation, sulfoglycolytic Entner-Doudoroff pathway
    - M01051 Sulfoquinovose degradation
    - M01052 Sulfoquinovose degradation
- Energy metabolism
  - Carbon fixation
    - M00165 Reductive pentose phosphate cycle (Calvin cycle)
    - M00168 CAM (Crassulacean acid metabolism), dark
    - M00169 CAM (Crassulacean acid metabolism), light
    - M00172 C4-dicarboxylic acid cycle, NADP - malic enzyme type
    - M00171 C4-dicarboxylic acid cycle, NAD - malic enzyme type
    - M00170 C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type
    - M00173 Reductive citrate cycle (Arnon-Buchanan cycle)
    - M00376 3-Hydroxypropionate bi-cycle
    - M00375 Hydroxypropionate-hydroxybutylate cycle
    - M00374 Dicarboxylate-hydroxybutyrate cycle
    - M00377 Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway)
    - M00579 Phosphate acetyltransferase-acetate kinase pathway
    - M00620 Incomplete reductive citrate cycle
  - Methane metabolism
    - M00567 Methanogenesis
    - M00357 Methanogenesis
    - M00356 Methanogenesis
    - M00563 Methanogenesis
    - M00358 Coenzyme M biosynthesis
    - M00608 2-Oxocarboxylic acid chain extension
    - M00174 Methane oxidation, methanotroph
    - M00346 Formaldehyde assimilation, serine pathway
    - M00345 Formaldehyde assimilation, ribulose monophosphate pathway
    - M00344 Formaldehyde assimilation, xylulose monophosphate pathway
    - M00378 F420 biosynthesis, archaea
    - M00935 Methanofuran biosynthesis
    - M00422 Acetyl-CoA pathway
  - Nitrogen metabolism
    - M00175 Nitrogen fixation
    - M00531 Assimilatory nitrate reduction
    - M00530 Dissimilatory nitrate reduction
    - M00529 Denitrification
    - M00528 Nitrification
    - M00804 Complete nitrification, comammox
    - M00973 Anammox
  - Sulfur metabolism
    - M00987 Assimilatory sulfate reduction, plants
    - M00176 Assimilatory sulfate reduction
    - M00596 Dissimilatory sulfate reduction
    - M00595 Sulfur oxidation, SOX system
    - M00984 Sulfur oxidation, tetrathionate intermediate (S4I) pathway
    - M00986 Sulfur reduction
    - M00985 Sulfide oxidation
    - M00990 Dimethylsulfoniopropionate (DMSP) degradation, demethylation pathway
    - M00991 Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway
    - M00992 Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway
    - M00993 Dimethylsulfoniopropionate (DMSP) degradation, cleavage pathway
  - Photosynthesis
    - M00161 Photosystem II
    - M00163 Photosystem I
  - ATP synthesis
    - M00144 NADH:quinone oxidoreductase, prokaryotes
    - M00145 NAD(P)H:quinone oxidoreductase, chloroplasts and cyanobacteria
    - M00142 NADH:ubiquinone oxidoreductase, mitochondria
    - M00143 NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria
    - M00146 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex
    - M00147 NADH dehydrogenase (ubiquinone) 1 beta subcomplex
    - M00149 Succinate dehydrogenase, prokaryotes
    - M00150 Fumarate reductase, prokaryotes
    - M00148 Succinate dehydrogenase (ubiquinone)
    - M00162 Cytochrome b6f complex
    - M00151 Cytochrome bc1 complex respiratory unit
    - M00152 Cytochrome bc1 complex
    - M00154 Cytochrome c oxidase
    - M00155 Cytochrome c oxidase, prokaryotes
    - M00153 Cytochrome bd ubiquinol oxidase
    - M00417 Cytochrome o ubiquinol oxidase
    - M00416 Cytochrome aa3-600 menaquinol oxidase
    - M00156 Cytochrome c oxidase, cbb3-type
    - M00157 F-type ATPase, prokaryotes and chloroplasts
    - M00158 F-type ATPase, eukaryotes
    - M00160 V-type ATPase, eukaryotes
- Lipid metabolism
  - Fatty acid metabolism
    - M00082 Fatty acid biosynthesis, initiation
    - M00083 Fatty acid biosynthesis, elongation
    - M00873 Fatty acid biosynthesis in mitochondria, animals
    - M00874 Fatty acid biosynthesis in mitochondria, fungi
    - M00085 Fatty acid elongation in mitochondria
    - M00415 Fatty acid elongation in endoplasmic reticulum
    - M00086 beta-Oxidation, acyl-CoA synthesis
    - M00087 beta-Oxidation
    - M00861 beta-Oxidation, peroxisome, VLCFA
    - M00885 Meromycolic acid biosynthesis, initiation and elongation FAS II (KasA)
    - M00886 Meromycolic acid biosynthesis, initiation and elongation FAS II (KasA and KasB)
    - M00887 Mycolic acid biosynthesis
  - Sterol biosynthesis
    - M00101 Cholesterol biosynthesis
    - M00102 Ergocalciferol biosynthesis
    - M00917 Phytosterol biosynthesis
    - M00103 Cholecalciferol biosynthesis
    - M00104 Bile acid biosynthesis
    - M00106 Conjugated bile acid biosynthesis
    - M00862 beta-Oxidation, peroxisome
    - M00107 Steroid hormone biosynthesis
    - M00108 C21-Steroid hormone biosynthesis
    - M00109 C21-Steroid hormone biosynthesis
    - M00110 C19/C18-Steroid hormone biosynthesis
    - M00976 C19-Steroid hormone biosynthesis
    - M00977 C19-Steroid hormone biosynthesis (androgen backdoor pathway)
  - Lipid metabolism
    - M00088 Ketone body biosynthesis
    - M00089 Triacylglycerol biosynthesis
    - M00098 Acylglycerol degradation
    - M01048 Sulfoquinovosyldiacylglycerol (SQDG) biosynthesis
    - M00090 Phosphatidylcholine (PC) biosynthesis
    - M00091 Phosphatidylcholine (PC) biosynthesis
    - M00092 Phosphatidylethanolamine (PE) biosynthesis
    - M00093 Phosphatidylethanolamine (PE) biosynthesis
    - M00094 Ceramide biosynthesis
    - M00066 Lactosylceramide biosynthesis
    - M00067 Sulfoglycolipids biosynthesis
    - M00099 Sphingosine biosynthesis
    - M00100 Sphingosine degradation
    - M00113 Jasmonic acid biosynthesis
- Nucleotide metabolism
  - Purine metabolism
    - M00048 De novo purine biosynthesis
    - M00049 Adenine ribonucleotide biosynthesis
    - M00050 Guanine ribonucleotide biosynthesis
    - M00053 Deoxyribonucleotide biosynthesis
    - M00958 Adenine ribonucleotide degradation
    - M00959 Guanine ribonucleotide degradation
    - M00546 Purine degradation
  - Pyrimidine metabolism
    - M00051 De novo pyrimidine biosynthesis
    - M00052 Pyrimidine ribonucleotide biosynthesis
    - M00938 Pyrimidine deoxyribonucleotide biosynthesis
    - M00046 Pyrimidine degradation
    - M00939 Pyrimidine degradation
- Amino acid metabolism
  - Serine and threonine metabolism
    - M00020 Serine biosynthesis
    - M00018 Threonine biosynthesis
    - M00621 Glycine cleavage system
    - M00555 Betaine biosynthesis
    - M00974 Betaine metabolism, animals
    - M00975 Betaine degradation, bacteria
    - M00033 Ectoine biosynthesis
    - M00919 Ectoine degradation
  - Cysteine and methionine metabolism
    - M00021 Cysteine biosynthesis
    - M00338 Cysteine biosynthesis
    - M00609 Cysteine biosynthesis
    - M00017 Methionine biosynthesis
    - M00034 Methionine salvage pathway
    - M00035 Methionine degradation
    - M00368 Ethylene biosynthesis
  - Branched-chain amino acid metabolism
    - M00019 Valine/isoleucine biosynthesis
    - M00535 Isoleucine biosynthesis
    - M00570 Isoleucine biosynthesis
    - M00432 Leucine biosynthesis
    - M00036 Leucine degradation
  - Lysine metabolism
    - M00016 Lysine biosynthesis, succinyl-DAP pathway
    - M00525 Lysine biosynthesis, acetyl-DAP pathway
    - M00526 Lysine biosynthesis, DAP dehydrogenase pathway
    - M00527 Lysine biosynthesis, DAP aminotransferase pathway
    - M00030 Lysine biosynthesis, AAA pathway
    - M00433 Lysine biosynthesis
    - M00031 Lysine biosynthesis, mediated by LysW
    - M00032 Lysine degradation
    - M00956 Lysine degradation, bacteria
    - M00957 Lysine degradation, bacteria
    - M00960 Lysine degradation, bacteria
  - Arginine and proline metabolism
    - M00028 Ornithine biosynthesis
    - M00763 Ornithine biosynthesis, mediated by LysW
    - M00844 Arginine biosynthesis
    - M00845 Arginine biosynthesis
    - M00029 Urea cycle
    - M00978 Ornithine-ammonia cycle
    - M00015 Proline biosynthesis
    - M00970 Proline degradation
    - M00972 Proline metabolism
    - M00047 Creatine pathway
    - M00879 Arginine succinyltransferase pathway
  - Polyamine biosynthesis
    - M00133 Polyamine biosynthesis
    - M00134 Polyamine biosynthesis
    - M00135 GABA biosynthesis, eukaryotes
    - M00136 GABA biosynthesis, prokaryotes
  - Histidine metabolism
    - M00026 Histidine biosynthesis
    - M00045 Histidine degradation
  - Aromatic amino acid metabolism
    - M00022 Shikimate pathway
    - M00023 Tryptophan biosynthesis
    - M00024 Phenylalanine biosynthesis
    - M00910 Phenylalanine biosynthesis
    - M00025 Tyrosine biosynthesis
    - M00040 Tyrosine biosynthesis
    - M00042 Catecholamine biosynthesis
    - M00043 Thyroid hormone biosynthesis
    - M00044 Tyrosine degradation
    - M00533 Homoprotocatechuate degradation
    - M00037 Melatonin biosynthesis, animals
    - M00936 Melatonin biosynthesis, plants
    - M00038 Tryptophan metabolism
  - Other amino acid metabolism
    - M00027 GABA (gamma-Aminobutyrate) shunt
    - M00369 Cyanogenic glycoside biosynthesis
    - M00118 Glutathione biosynthesis
    - M00947 D-Arginine racemization
    - M00948 Hydroxyproline degradation
    - M00949 Staphylopine biosynthesis
- Glycan metabolism
  - Nucleotide sugar biosynthesis
    - M00892 UDP-GlcNAc biosynthesis, eukaryotes
    - M01003 UDP-GlcNAc biosynthesis
    - M01002 UDP-GalNAc biosynthesis
    - M00996 UDP-MurNAc biosynthesis
    - M00995 UDP-MurNAc biosynthesis
    - M00549 UDP-Glc biosynthesis
    - M01004 UDP-Galf biosynthesis
    - M00998 UDP-L-Ara biosynthesis
    - M00997 UDP-Xyl/L-Ara biosynthesis
    - M00994 UDP-GlcA biosynthesis
    - M00999 UDP-GlcA/GalA biosynthesis
    - M00554 UDP-Gal biosynthesis
    - M01000 GDP-Man biosynthesis
    - M01015 GDP-Man biosynthesis
    - M01001 GDP-L-Fuc biosynthesis
    - M01036 UDP-GalNAcA biosynthesis
    - M01035 UDP-ManNAc3NAcA biosynthesis
    - M01005 UDP-XylNAc biosynthesis
    - M00923 UDP-L-FucNAc biosynthesis
    - M01007 CMP-Pse5Ac7Ac biosynthesis
    - M01008 CMP-8eLeg5Ac7Ac biosynthesis
    - M01009 UDP-QuiNAc biosynthesis
    - M01032 UDP-D-FucNAc biosynthesis
    - M01033 UDP-yelosamine biosynthesis
    - M01037 UDP-D-FucNAc4N biosynthesis
    - M01010 UDP-BacNAc4NAc biosynthesis
    - M01011 CMP-Leg5Ac7Ac biosynthesis
    - M01012 CMP-Leg5Ac7Ala biosynthesis
    - M00954 CMP-KDN biosynthesis
    - M00063 CMP-KDO biosynthesis
    - M00922 CMP-Neu5Ac biosynthesis, bacteria
    - M00955 CMP-Neu5Ac/Neu5Gc biosynthesis, animals
    - M01014 UDP-ManNAcA biosynthesis
    - M01028 GDP-DDmanHep biosynthesis
    - M00064 ADP-LDmanHep biosynthesis
    - M01021 UDP-L-Rha biosynthesis
    - M00761 Und-P-alpha-L-Ara4N biosynthesis
    - M01029 CDP-Tyv biosynthesis
    - M01030 CDP-Abe biosynthesis
    - M01031 CDP-Asc biosynthesis
    - M00793 dTDP-L-Rha biosynthesis
    - M01022 dTDP-6-deoxy-L-Tal biosynthesis
    - M01023 dTDP-D-Fuc3NAc biosynthesis
    - M01024 dTDP-Qui3NAc biosynthesis
    - M01025 dTDP-D-Fuc4NAc biosynthesis
    - M01026 dTDP-Qui4NAc biosynthesis
    - M01027 dTDP-D-Fucf biosynthesis
    - M01006 GDP-D-Rha4N biosynthesis
    - M01034 GDP-D-Rha4NFormyl biosynthesis
    - M01020 GDP-D-Rha4NAc biosynthesis
    - M01016 GDP-L-Fuc biosynthesis
    - M01017 GDP-L-Col biosynthesis
    - M01018 GDP-D-Rha biosynthesis
    - M01019 GDP-6-deoxy-Tal biosynthesis
  - Glycan biosynthesis
    - M00055 N-glycan precursor biosynthesis
    - M00072 N-glycosylation by oligosaccharyltransferase
    - M00073 N-glycan precursor trimming
    - M00074 N-glycan biosynthesis, high-mannose type
    - M00075 N-glycan biosynthesis, complex type
    - M00056 O-glycan biosynthesis, mucin type core
    - M00872 O-glycan biosynthesis, mannose type (core M3)
    - M00065 GPI-anchor biosynthesis, core oligosaccharide
    - M00983 GPI-anchor remodeling
    - M00070 Glycosphingolipid biosynthesis, lacto-series
    - M00071 Glycosphingolipid biosynthesis, neolacto-series
    - M00068 Glycosphingolipid biosynthesis, globo-series
    - M00069 Glycosphingolipid biosynthesis, ganglio series
  - Glycosaminoglycan metabolism
    - M00057 Glycosaminoglycan biosynthesis, linkage tetrasaccharide
    - M00058 Glycosaminoglycan biosynthesis, chondroitin sulfate backbone
    - M00059 Glycosaminoglycan biosynthesis, heparan sulfate backbone
    - M00076 Dermatan sulfate degradation
    - M00077 Chondroitin sulfate degradation
    - M00078 Heparan sulfate degradation
    - M00079 Keratan sulfate degradation
  - Lipopolysaccharide metabolism
    - M00060 KDO2-lipid A biosynthesis, Raetz pathway, LpxL-LpxM type
    - M00866 KDO2-lipid A biosynthesis, Raetz pathway, non-LpxL-LpxM type
    - M00867 KDO2-lipid A modification pathway
  - Other polysaccharide metabolism
    - M00888 Galactofuranan biosynthesis
- Metabolism of cofactors and vitamins
  - Cofactor and vitamin metabolism
    - M00127 Thiamine biosynthesis, prokaryotes
    - M00895 Thiamine biosynthesis, prokaryotes
    - M00896 Thiamine biosynthesis, archaea
    - M00897 Thiamine biosynthesis, plants
    - M00898 Thiamine biosynthesis
    - M00899 Thiamine salvage pathway
    - M00125 Riboflavin biosynthesis, plants and bacteria
    - M00911 Riboflavin biosynthesis, fungi
    - M00124 Pyridoxal phosphate biosynthesis
    - M00916 Pyridoxal phosphate biosynthesis
    - M00115 NAD biosynthesis
    - M00912 NAD biosynthesis
    - M00810 Nicotine degradation, pyridine pathway
    - M00811 Nicotine degradation, pyrrolidine pathway
    - M00622 Nicotinate degradation
    - M00119 Pantothenate biosynthesis
    - M00913 Pantothenate biosynthesis
    - M00120 Coenzyme A biosynthesis
    - M00914 Coenzyme A biosynthesis, archaea
    - M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway
    - M00123 Biotin biosynthesis
    - M00950 Biotin biosynthesis, BioU pathway
    - M00573 Biotin biosynthesis, BioI pathway
    - M00577 Biotin biosynthesis, BioW pathway
    - M00881 Lipoic acid biosynthesis, plants and bacteria
    - M00882 Lipoic acid biosynthesis, eukaryotes
    - M00883 Lipoic acid biosynthesis, animals and bacteria
    - M00884 Lipoic acid biosynthesis
    - M00126 Tetrahydrofolate biosynthesis
    - M00840 Tetrahydrofolate biosynthesis, mediated by ribA and trpF
    - M00841 Tetrahydrofolate biosynthesis, mediated by PTPS
    - M00842 Tetrahydrobiopterin biosynthesis
    - M00843 L-threo-Tetrahydrobiopterin biosynthesis
    - M00880 Molybdenum cofactor biosynthesis
    - M00988 PreQ1 biosynthesis
    - M00140 C1-unit interconversion, prokaryotes
    - M00141 C1-unit interconversion, eukaryotes
    - M00846 Siroheme biosynthesis
    - M00868 Heme biosynthesis, animals and fungi
    - M00121 Heme biosynthesis, plants and bacteria
    - M00926 Heme biosynthesis, bacteria
    - M00847 Heme biosynthesis, archaea
    - M00924 Cobalamin biosynthesis, anaerobic
    - M00925 Cobalamin biosynthesis, aerobic
    - M00122 Cobalamin biosynthesis
    - M00836 Coenzyme F430 biosynthesis
    - M00117 Ubiquinone biosynthesis, prokaryotes
    - M00989 Ubiquinone biosynthesis, O2-independent, prokaryotes
    - M00128 Ubiquinone biosynthesis, eukaryotes
    - M00116 Menaquinone biosynthesis
    - M00930 Menaquinone biosynthesis, futalosine pathway
    - M00931 Menaquinone biosynthesis, modified futalosine pathway
    - M00932 Phylloquinone biosynthesis
    - M00112 Tocopherol/tocotorienol biosynthesis
    - M00933 Plastoquinone biosynthesis
- Biosynthesis of terpenoids and polyketides
  - Terpenoid backbone biosynthesis
    - M00095 C5 isoprenoid biosynthesis, mevalonate pathway
    - M00849 C5 isoprenoid biosynthesis, mevalonate pathway, archaea
    - M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway
    - M00366 C10-C20 isoprenoid biosynthesis, plants
  - Terpenoid biosynthesis
    - M01038 Staphyloxanthin biosynthesis, bacteria
    - M00097 Lycopene biosynthesis
    - M01039 Spirilloxanthin biosynthesis, bacteria
    - M01040 Lutein biosynthesis, plants
    - M01041 Bacterioruberin biosynthesis, archaea
    - M01042 Neurosporaxanthin biosynthesis, fungi
    - M01043 Okenone biosynthesis, bacteria
    - M01045 Zeaxanthin biosynthesis
    - M01046 Xanthophyll cycle
    - M00372 Abscisic acid biosynthesis, plants
    - M01044 Astaxanthin biosynthesis
    - M00371 Castasterone biosynthesis, plants
    - M00927 Gibberellin A12 biosynthesis, plants
    - M00928 Gibberellin A4/A1 biosynthesis, plants
    - M00929 Gibberellin A1 biosynthesis
  - Macrolide biosynthesis
    - M00773 Tylosin biosynthesis
    - M00934 Mycinamicin biosynthesis
    - M00774 Erythromycin biosynthesis
    - M00775 Oleandomycin biosynthesis
    - M00776 Pikromycin/methymycin biosynthesis
    - M00777 Avermectin biosynthesis
  - Enediyne biosynthesis
    - M00824 9-membered enediyne core biosynthesis
    - M00825 10-membered enediyne core biosynthesis
    - M00826 C-1027 benzoxazolinate moiety biosynthesis
    - M00827 C-1027 beta-amino acid moiety biosynthesis
    - M00828 Maduropeptin beta-hydroxy acid moiety biosynthesis
    - M00829 3,6-Dimethylsalicylyl-CoA biosynthesis
    - M00830 Neocarzinostatin naphthoate moiety biosynthesis
    - M00831 Kedarcidin 2-hydroxynaphthoate moiety biosynthesis
    - M00832 Kedarcidin 2-aza-3-chloro-beta-tyrosine moiety biosynthesis
    - M00834 Calicheamicin orsellinate moiety biosynthesis
    - M00833 Calicheamicin biosynthesis
  - Type II polyketide biosynthesis
    - M00778 Type II polyketide backbone biosynthesis
    - M00779 Dihydrokalafungin biosynthesis
    - M00780 Tetracycline/oxytetracycline biosynthesis
    - M00823 Chlortetracycline biosynthesis
    - M00781 Nogalavinone/aklavinone biosynthesis
    - M00782 Mithramycin biosynthesis
    - M00783 Tetracenomycin C/8-demethyltetracenomycin C biosynthesis
    - M00784 Elloramycin biosynthesis
  - Polyketide sugar unit biosynthesis
    - M00794 dTDP-6-deoxy-D-allose biosynthesis
    - M00795 dTDP-beta-L-noviose biosynthesis
    - M00796 dTDP-D-mycaminose biosynthesis
    - M00797 dTDP-D-desosamine biosynthesis
    - M00798 dTDP-L-mycarose biosynthesis
    - M00799 dTDP-L-oleandrose biosynthesis
    - M00800 dTDP-L-megosamine biosynthesis
    - M00801 dTDP-L-olivose biosynthesis
    - M00802 dTDP-D-forosamine biosynthesis
    - M00803 dTDP-D-angolosamine biosynthesis
- Biosynthesis of other secondary metabolites
  - Biosynthesis of phytochemical compounds
    - M00039 Monolignol biosynthesis
    - M00137 Flavanone biosynthesis
    - M00940 Flavanone biosynthesis
    - M00138 Flavonoid biosynthesis
    - M00941 Isoflavone biosynthesis
    - M00942 Pterocarpan biosynthesis
    - M00966 Equol biosynthesis
    - M00967 Flavone degradation
    - M00962 Psilocybin biosynthesis
    - M00963 Chanoclavine aldehyde biosynthesis
    - M00964 Fumigaclavine biosynthesis
    - M00981 Geissoschizine biosynthesis
    - M00979 Ajmaline biosynthesis
    - M00980 Strychnine biosynthesis
    - M00965 Vinblastine biosynthesis
    - M00943 Reticuline biosynthesis
    - M00944 Morphine biosynthesis
    - M00945 Sanguinarine biosynthesis
    - M00946 Noscapine biosynthesis
    - M00961 Betacyanin biosynthesis
    - M00370 Glucosinolate biosynthesis
    - M00900 Crocin biosynthesis
    - M00971 QS-7 biosynthesis
    - M00894 Cannabidiol biosynthesis
    - M00953 Mugineic acid biosynthesis
    - M00952 Benzoxazinoid biosynthesis
    - M00902 Podophyllotoxin biosynthesis
  - Biosynthesis of beta-lactams
    - M00672 Penicillin biosynthesis
    - M00673 Cephamycin C biosynthesis
    - M00675 Carbapenem-3-carboxylate biosynthesis
    - M00736 Nocardicin A biosynthesis
    - M00674 Clavaminate biosynthesis
  - Biosynthesis of other antibiotics
    - M00877 Kanosamine biosynthesis
    - M00889 Puromycin biosynthesis
    - M00815 Validamycin A biosynthesis
    - M00904 Dapdiamides biosynthesis
    - M00787 Bacilysin biosynthesis
    - M00785 Cycloserine biosynthesis
    - M00848 Aurachin biosynthesis
    - M00788 Terpentecin biosynthesis
    - M00819 Pentalenolactone biosynthesis
    - M00903 Fosfomycin biosynthesis
    - M00890 Roseoflavin biosynthesis
    - M00951 Cremeomycin biosynthesis
    - M00969 Fumagillin biosynthesis
  - Biosynthesis of other fungal compounds
    - M00661 Paspaline biosynthesis
    - M00786 Fumitremorgin alkaloid biosynthesis
    - M00937 Aflatoxin biosynthesis
    - M00893 Lovastatin biosynthesis
    - M00891 Ditryptophenaline biosynthesis
    - M00901 Fumiquinazoline biosynthesis
  - Biosynthesis of other bacterial compounds
    - M00814 Acarbose biosynthesis
    - M00789 Rebeccamycin biosynthesis
    - M00790 Pyrrolnitrin biosynthesis
    - M00805 Staurosporine biosynthesis
    - M00808 Violacein biosynthesis
    - M00835 Pyocyanine biosynthesis
    - M00837 Prodigiosin biosynthesis
    - M00838 Undecylprodigiosin biosynthesis
    - M00918 Aerobactin biosynthesis
    - M01053 Deferoxamine biosynthesis
    - M01054 Schizokinen biosynthesis
    - M01055 Putrebactin biosynthesis
    - M01056 Alcaligin biosynthesis
    - M01060 Petrobactin biosynthesis
    - M00876 Staphyloferrin A biosynthesis
    - M01057 Rhizoferrin biosynthesis
    - M00875 Staphyloferrin B biosynthesis
    - M01058 Achromobactin biosynthesis
    - M01059 Vibrioferrin biosynthesis
    - M00921 Cyclooctatin biosynthesis
    - M00905 Grixazone biosynthesis
    - M00906 Ethynylserine biosynthesis
  - Biosynthesis of other compounds
    - M01047 Juvenile hormone biosynthesis, insects
    - M01013 Molting hormone biosynthesis, insects
- Xenobiotics biodegradation
  - Aromatics degradation
    - M00538 Toluene degradation
    - M00537 Xylene degradation
    - M00419 Cymene degradation
    - M00547 Benzene/toluene degradation
    - M00548 Benzene degradation
    - M00551 Benzoate degradation
    - M00637 Anthranilate degradation
    - M00568 Catechol ortho-cleavage
    - M00569 Catechol meta-cleavage
    - M00539 Cumate degradation
    - M00543 Biphenyl degradation
    - M00544 Carbazole degradation
    - M00418 Toluene degradation, anaerobic
    - M00541 Benzoyl-CoA degradation
    - M00540 Benzoate degradation
    - M00534 Naphthalene degradation
    - M00638 Salicylate degradation
    - M00624 Terephthalate degradation
    - M00623 Phthalate degradation
    - M00636 Phthalate degradation
    - M00878 Phenylacetate degradation
    - M00545 Trans-cinnamate degradation
    - M00915 Caffeine degradation

Metabolic pathways - Theobroma cacao (cacao)

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