| Motif id | From | To | Definition | E value | Score |
| pf:CheX | 31 | 74 | Chemotaxis phosphatase CheX
| 0.007 | - |
| pf:CheC | 36 | 72 | CheC-like family
| 1.4e-15 | - |
| pf:FliM | 53 | 223 | Flagellar motor switch protein FliM
| 5.6e-08 | - |
| pf:TimP_toxic | 91 | 107 | | 0.2 | - |
| pf:CheX | 92 | 168 | Chemotaxis phosphatase CheX
| 0.0007 | - |
| pf:CheC | 133 | 169 | CheC-like family
| 6e-16 | - |
| pf:SepQ_C | 297 | 365 | | 3e-05 | - |
| pf:FliMN_C | 298 | 368 | Type III flagellar switch regulator (C-ring) FliN C-term
| 1.5e-24 | - |