| Motif id | From | To | Definition | E value | Score |
| pf:CheX | 32 | 86 | Chemotaxis phosphatase CheX
| 0.0048 | - |
| pf:CheC | 36 | 72 | CheC-like family
| 1.4e-15 | - |
| pf:FliM | 54 | 200 | Flagellar motor switch protein FliM
| 4.3e-06 | - |
| pf:CheX | 92 | 168 | Chemotaxis phosphatase CheX
| 0.0076 | - |
| pf:CheC | 133 | 169 | CheC-like family
| 5.7e-16 | - |
| pf:FliMN_C | 298 | 368 | Type III flagellar switch regulator (C-ring) FliN C-term
| 2.1e-24 | - |