| Motif id | From | To | Definition | E value | Score |
| pf:CheX | 31 | 82 | Chemotaxis phosphatase CheX
| 0.005 | - |
| pf:CheC | 36 | 72 | CheC-like family
| 1.1e-15 | - |
| pf:FliM | 54 | 200 | Flagellar motor switch protein FliM
| 5.1e-06 | - |
| pf:CheX | 92 | 168 | Chemotaxis phosphatase CheX
| 0.0011 | - |
| pf:CheC | 133 | 169 | CheC-like family
| 4.8e-16 | - |
| pf:FliMN_C | 298 | 368 | Type III flagellar switch regulator (C-ring) FliN C-term
| 1.8e-24 | - |