| Motif id | From | To | Definition | E value | Score |
| pf:PBP1_TM | 2 | 75 | Transmembrane domain of transglycosylase PBP1 at N-terminal
| 5.7e-23 | - |
| pf:UvrB_inter | 107 | 184 | | 0.00011 | - |
| pf:UB2H | 109 | 193 | Bifunctional transglycosylase second domain
| 3.1e-25 | - |
| pf:Transgly | 205 | 375 | Transglycosylase
| 1.2e-56 | - |
| pf:Transpeptidase | 469 | 708 | Penicillin binding protein transpeptidase domain
| 1e-23 | - |
| pf:PBP1b_C | 756 | 795 | | 6.1e-16 | - |
| pf:TFIIA | 787 | 826 | Transcription factor IIA, alpha/beta subunit
| 0.015 | - |
| pf:FtsA_C | 797 | 841 | | 0.09 | - |