| Motif id | From | To | Definition | E value | Score |
| pf:zf-UBP_var | 147 | 208 | | 2.5e-20 | - |
| pf:zf-UBP | 320 | 392 | Zn-finger in ubiquitin-hydrolases and other protein
| 1.1e-17 | - |
| pf:UCH | 448 | 931 | Ubiquitin carboxyl-terminal hydrolase
| 3.3e-45 | - |
| pf:UCH_1 | 449 | 673 | Ubiquitin carboxyl-terminal hydrolase
| 0.16 | - |
| pf:UBA | 732 | 767 | UBA/TS-N domain
| 9.6e-06 | - |
| pf:UBA | 802 | 835 | UBA/TS-N domain
| 1.4e-11 | - |
| pf:HYPK_UBA | 810 | 832 | | 0.069 | - |
| pf:UBA_4 | 811 | 841 | UBA-like domain
| 0.011 | - |
| pf:UCH_1 | 866 | 915 | Ubiquitin carboxyl-terminal hydrolase
| 0.0028 | - |