| Motif id | From | To | Definition | E value | Score |
| pf:UvrD-helicase | 14 | 444 | UvrD/REP helicase N-terminal domain
| 2.6e-47 | - |
| pf:AAA_30 | 16 | 101 | AAA domain
| 0.29 | - |
| pf:AAA_19 | 17 | 78 | AAA domain
| 4.6e-05 | - |
| pf:AAA_11 | 17 | 69 | AAA domain
| 0.01 | - |
| pf:ResIII | 19 | 69 | Type III restriction enzyme, res subunit
| 0.31 | - |
| pf:UBA_BIRC2-3 | 94 | 115 | | 0.7 | - |
| pf:AAA_19 | 386 | 431 | AAA domain
| 0.00056 | - |
| pf:UvrD_C | 534 | 637 | UvrD-like helicase C-terminal domain
| 0.021 | - |
| pf:DUF374 | 558 | 591 | Domain of unknown function (DUF374)
| 0.22 | - |
| pf:UvrD_C | 706 | 828 | UvrD-like helicase C-terminal domain
| 5.3e-10 | - |
| pf:UvrD_C_2 | 742 | 764 | UvrD-like helicase C-terminal domain
| 2.3e-05 | - |
| pf:UvrD_C_2 | 806 | 828 | UvrD-like helicase C-terminal domain
| 0.034 | - |
| pf:PDDEXK_1 | 974 | 1157 | PD-(D/E)XK nuclease superfamily
| 0.0026 | - |