| Motif id | From | To | Definition | E value | Score |
| pf:S1 | 257 | 324 | S1 RNA binding domain
| 5.2e-10 | - |
| pf:T2SSE | 558 | 598 | Type II/IV secretion system protein
| 0.0074 | - |
| pf:TsaE | 564 | 600 | Threonylcarbamoyl adenosine biosynthesis protein TsaE
| 0.28 | - |
| pf:DEAD | 567 | 716 | DEAD/DEAH box helicase
| 3.1e-06 | - |
| pf:nSTAND3 | 567 | 593 | | 0.074 | - |
| pf:AAA_16 | 568 | 598 | AAA ATPase domain
| 0.23 | - |
| pf:AAA_19 | 572 | 700 | AAA domain
| 0.089 | - |
| pf:AAA_30 | 574 | 683 | AAA domain
| 0.062 | - |
| pf:AAA_22 | 575 | 710 | AAA domain
| 4.7e-05 | - |
| pf:Helicase_C | 759 | 890 | Helicase conserved C-terminal domain
| 2.2e-10 | - |
| pf:HA2_N | 952 | 979 | | 3e-08 | - |
| pf:HA2_C | 981 | 1040 | | 5.6e-15 | - |
| pf:OB_NTP_bind | 1098 | 1173 | Oligonucleotide/oligosaccharide-binding (OB)-fold
| 7.1e-23 | - |