| Motif id | From | To | Definition | E value | Score |
| pf:DnaA_N | 7 | 68 | DnaA N-terminal domain
| 9.3e-08 | - |
| pf:Bac_DnaA | 158 | 317 | Bacterial dnaA protein
| 4.4e-67 | - |
| pf:TsaE | 185 | 212 | Threonylcarbamoyl adenosine biosynthesis protein TsaE
| 0.51 | - |
| pf:AAA_16 | 187 | 260 | AAA ATPase domain
| 0.11 | - |
| pf:ATPase_2 | 190 | 294 | ATPase domain predominantly from Archaea
| 0.017 | - |
| pf:AAA_14 | 191 | 290 | AAA domain
| 9e-05 | - |
| pf:IstB_IS21 | 192 | 296 | IstB-like ATP binding protein
| 5.2e-09 | - |
| pf:NPHP3_N | 192 | 257 | | 0.076 | - |
| pf:AFG1_ATPase | 192 | 225 | AFG1-like ATPase
| 0.071 | - |
| pf:AAA_19 | 192 | 227 | AAA domain
| 0.8 | - |
| pf:AAA_22 | 193 | 284 | AAA domain
| 0.76 | - |
| pf:AAA | 194 | 307 | ATPase family associated with various cellular activities (AAA)
| 0.0002 | - |
| pf:Hda_lid | 326 | 365 | | 0.15 | - |
| pf:Bac_DnaA_C | 400 | 467 | Bacterial dnaA protein helix-turn-helix
| 5.2e-27 | - |