SSDB Motif Search Result
Organism :
Rattus norvegicus (rat)
Gene :
309458
Definition :
K14792 rRNA biogenesis protein RRP5 | (RefSeq) Pdcd11; protein RRP5 homolog
Motif id
From
To
Definition
E value
Score
pf:S1_RRP5
80
170
3.1e-19
-
pf:S1
82
131
S1 RNA binding domain
0.83
-
pf:S1_RRP5
184
257
0.00098
-
pf:S1
186
257
S1 RNA binding domain
0.0012
-
pf:DUF2110
186
211
Uncharacterized protein conserved in archaea (DUF2110)
0.29
-
pf:S1_RRP5
278
345
5.2e-17
-
pf:OB_RRP5_4th
362
442
1.2e-05
-
pf:S1_RRP5
369
435
5.9e-16
-
pf:S1_RRP5
451
516
5e-06
-
pf:S1
451
522
S1 RNA binding domain
4.5e-11
-
pf:OB_RRP5_4th
466
511
0.21
-
pf:S1_RRP5
540
610
8.8e-05
-
pf:S1
546
610
S1 RNA binding domain
4.4e-12
-
pf:S1
633
672
S1 RNA binding domain
0.74
-
pf:S1_RRP5
726
797
4.1e-12
-
pf:Spt6_S1
726
800
0.0069
-
pf:S1
727
798
S1 RNA binding domain
6.4e-08
-
pf:S1_RRP5
843
910
1.1e-15
-
pf:OB_RRP5
917
982
0.012
-
pf:S1_RRP5
922
994
4.5e-16
-
pf:S1
1039
1104
S1 RNA binding domain
1.1e-05
-
pf:S1_RRP5
1041
1099
0.031
-
pf:S1_RRP5
1151
1226
5.2e-15
-
pf:S1_RRP5
1232
1302
5.7e-14
-
pf:S1_RRP5
1326
1400
1.4e-15
-
pf:NRDE-2
1607
1689
NRDE-2, necessary for RNA interference
0.57
-
pf:HAT_Syf1_CNRKL1_N
1609
1692
8.6e-05
-
pf:HAT_PRP39_C
1612
1668
0.047
-
pf:HAT_PRP39_N
1612
1691
0.0074
-
pf:HAT_Syf1_CNRKL1_C
1622
1692
0.0049
-
pf:Suf
1626
1690
Suppressor of forked protein (Suf)
0.11
-
pf:HAT_Syf1_CNRKL1_N
1658
1775
1e-06
-
pf:ARM_TT21
1677
1729
0.033
-
pf:HAT_Syf1_CNRKL1_C
1685
1789
2.3e-06
-
pf:HAT_PRP39_C
1695
1798
1.2e-07
-
pf:Suf
1695
1757
Suppressor of forked protein (Suf)
0.11
-
pf:TPR_15
1697
1765
Tetratricopeptide repeat
0.63
-
pf:TPR_14
1698
1737
Tetratricopeptide repeat
0.034
-
pf:HAT_PRP39_N
1699
1761
0.34
-
pf:DUF7017
1700
1796
0.019
-
pf:UTP6_C
1732
1848
0.053
-
pf:TPR_19
1749
1804
Tetratricopeptide repeat
0.1
-
pf:NRDE-2
1751
1824
NRDE-2, necessary for RNA interference
0.23
-
pf:Suf
1765
1870
Suppressor of forked protein (Suf)
3.2e-09
-
pf:TPR_6
1768
1797
Tetratricopeptide repeat
0.49
-
pf:HAT_PRP39_N
1770
1864
4.5e-09
-
pf:TPR_14
1770
1807
Tetratricopeptide repeat
0.022
-
pf:ARM_TT21_5th
1771
1828
0.059
-
pf:HAT_Syf1_CNRKL1_N
1786
1859
0.0024
-
pf:HAT_Syf1_CNRKL1_C
1792
1869
1.3e-05
-
pf:HAT_PRP39_C
1799
1869
0.0028
-
[
GENES
|
KEGG2
|
KEGG
|
GenomeNet
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