| Motif id | From | To | Definition | E value | Score |
| pf:DUF2110 | 184 | 218 | Uncharacterized protein conserved in archaea (DUF2110)
| 0.5 | - |
| pf:S1 | 186 | 257 | S1 RNA binding domain
| 0.00052 | - |
| pf:S1 | 451 | 522 | S1 RNA binding domain
| 3.3e-11 | - |
| pf:S1 | 546 | 610 | S1 RNA binding domain
| 7.5e-12 | - |
| pf:S1 | 633 | 672 | S1 RNA binding domain
| 0.5 | - |
| pf:S1 | 729 | 798 | S1 RNA binding domain
| 2.4e-07 | - |
| pf:S1 | 1039 | 1104 | S1 RNA binding domain
| 8.4e-06 | - |
| pf:DUF1344 | 1042 | 1063 | Protein of unknown function (DUF1344)
| 0.15 | - |
| pf:TPR_14 | 1698 | 1736 | Tetratricopeptide repeat
| 0.22 | - |
| pf:TPR_7 | 1699 | 1727 | Tetratricopeptide repeat
| 0.89 | - |
| pf:TPR_15 | 1702 | 1764 | Tetratricopeptide repeat
| 0.5 | - |
| pf:Suf | 1731 | 1870 | Suppressor of forked protein (Suf)
| 1.2e-09 | - |
| pf:TPR_19 | 1748 | 1804 | Tetratricopeptide repeat
| 0.47 | - |
| pf:TPR_6 | 1770 | 1797 | Tetratricopeptide repeat
| 0.47 | - |