SSDB Motif Search Result


Organism : Variovorax paradoxus S110
Gene : Vapar_2723
Definition : K03578 ATP-dependent RNA helicase HrpA [EC:5.6.2.6] | (GenBank) ATP-dependent helicase HrpA
Motif idFromToDefinitionE valueScore
pf:AAA_252362AAA domain 0.22-
pf:PhoH2349PhoH-like protein 0.31-
pf:DEAD26181DEAD/DEAH box helicase 6.2e-08-
pf:AAA_1926151AAA domain 0.0024-
pf:nSTAND32657 0.037-
pf:AAA_3028147AAA domain 0.2-
pf:T2SSE3255Type II/IV secretion system protein 0.029-
pf:nSTAND_NTPase53458 0.23-
pf:AAA_2235174AAA domain 5.6e-05-
pf:AAA_233577AAA domain 0.047-
pf:SRP543594SRP54-type protein, GTPase domain 0.14-
pf:NACHT36188NACHT domain 8.5e-05-
pf:Helicase_C237359Helicase conserved C-terminal domain 1.3e-09-
pf:WHD_HA2423449 0.0064-
pf:HA2_C450505 2.9e-07-
pf:NTase-conflict487533 0.089-
pf:RNF34L-like_3rd526554 0.66-
pf:OB_NTP_bind580655Oligonucleotide/oligosaccharide-binding (OB)-fold 3.3e-10-
pf:DUF34186701286Domain of unknown function (DUF3418) 2.4e-208-

vap:Vapar_2723 pf:AAA_25 pf:PhoH pf:DEAD pf:AAA_19 pf:nSTAND3 pf:AAA_30 pf:T2SSE pf:nSTAND_NTPase5 pf:AAA_22 pf:AAA_23 pf:SRP54 pf:NACHT pf:Helicase_C pf:WHD_HA2 pf:HA2_C pf:NTase-conflict pf:RNF34L-like_3rd pf:OB_NTP_bind pf:DUF3418

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