| Motif id | From | To | Definition | E value | Score |
| pf:Clp_N | 20 | 123 | Clp amino terminal domain, pathogenicity island component
| 6.4e-06 | - |
| pf:AAA_16 | 213 | 314 | AAA ATPase domain
| 2.1e-07 | - |
| pf:DUF815 | 217 | 311 | Protein of unknown function (DUF815)
| 0.54 | - |
| pf:NBD_SMAX1 | 218 | 301 | | 2.1e-09 | - |
| pf:AAA_25 | 219 | 304 | AAA domain
| 0.071 | - |
| pf:TniB | 219 | 255 | Bacterial TniB protein
| 0.47 | - |
| pf:AAA_7 | 224 | 258 | P-loop containing dynein motor region D3
| 0.33 | - |
| pf:AAA_22 | 231 | 316 | AAA domain
| 0.087 | - |
| pf:AAA | 236 | 367 | ATPase family associated with various cellular activities (AAA)
| 2.6e-08 | - |
| pf:AAA_5 | 236 | 257 | AAA domain (dynein-related subfamily)
| 0.38 | - |
| pf:NACHT | 236 | 262 | NACHT domain
| 0.04 | - |
| pf:AAA_lid_9 | 376 | 467 | | 6e-30 | - |
| pf:Cyclin_N | 384 | 468 | Cyclin, N-terminal domain
| 0.014 | - |
| pf:AAA_2 | 652 | 818 | AAA domain (Cdc48 subfamily)
| 7.4e-55 | - |
| pf:Zeta_toxin | 652 | 702 | Zeta toxin
| 0.0015 | - |
| pf:Hpr_kinase_C | 654 | 675 | HPr Serine kinase C-terminal domain
| 0.23 | - |
| pf:AAA_22 | 655 | 694 | AAA domain
| 0.76 | - |
| pf:AAA_14 | 656 | 738 | AAA domain
| 0.47 | - |
| pf:Sigma54_activat | 656 | 766 | Sigma-54 interaction domain
| 0.0014 | - |
| pf:nSTAND3 | 656 | 697 | | 0.36 | - |
| pf:AAA_5 | 657 | 775 | AAA domain (dynein-related subfamily)
| 4.4e-07 | - |
| pf:AAA_7 | 657 | 700 | P-loop containing dynein motor region D3
| 0.4 | - |
| pf:AAA | 658 | 742 | ATPase family associated with various cellular activities (AAA)
| 1.5e-05 | - |
| pf:AAA_18 | 658 | 679 | AAA domain
| 0.38 | - |
| pf:CbiA | 658 | 679 | CobQ/CobB/MinD/ParA nucleotide binding domain
| 0.95 | - |
| pf:ClpB_D2-small | 825 | 899 | C-terminal, D2-small domain, of ClpB protein
| 1.5e-14 | - |