Paracidovorax avenae: Acav_2309
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Entry
Acav_2309 CDS
T01445
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aaa
Paracidovorax avenae
Pathway
aaa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Acav_2309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaa03019
]
Acav_2309
03016 Transfer RNA biogenesis [BR:
aaa03016
]
Acav_2309
Enzymes [BR:
aaa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Acav_2309
Messenger RNA biogenesis [BR:
aaa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Acav_2309
Transfer RNA biogenesis [BR:
aaa03016
]
Prokaryotic type
tRNA degradation factors
Acav_2309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
ADX46221
UniProt:
F0QCD0
LinkDB
All DBs
Position
2584183..2586498
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AA seq
771 aa
AA seq
DB search
MYIKKTKAVANIAHSDDEIEGSVQGHRDGHGFVQRDDGEADIYIPANEMRAVLHKDRVRV
RIARHDRRGRPEGRIVEIIERPHHPIIGRLLQESGVWLVAPEDKRYGQDVLIPKGATGSA
KTGQVVVVELTEPPALFGQPVGRVTEVLGEVDDPGMEIEIAVRKYGVPHEFSQEALAQAR
GLPDKVRAQDKRHRIDLTDVPLVTIDGEDARDFDDAVYCEPARVGRAKGWRLLVAIADVS
HYVETGSPIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVERLCMVCDMLVTAKG
EVHAYQFYPAVMFSHARFTYTEVAAILANTRGPEATKRRARVQDLLNLHDVYRALLSSRH
ARGAVDFETTETQIVCDDNGRIEKIVPRTRNDAHRLIEEAMLAANVCSADFIAQGGQPGL
YRVHEGPTPEKQEILRGYLKAMGVGMTIGDDPKPGDFQAIAEATKDRPDAQQIHTMLLRS
MQQAIYTPVNSGHFGLAYEAYTHFTSPIRRYPDLLVHRVIKAILGQTKYRLPALPVPGEA
HAKLAKRLAARVPAPTQQPRKPLSAAAVREVQAWEAAGLHCSANERRADEASRDVEAWLK
CKYMREHLGEEFSGLVTAATSFGIFVTLDAMYVEGLVHITELGGEYFKFDEARQELRGER
TGIRYAIGTRVRVQVSRVDLDGRRIDFRLVREGEESPAPARNSRGRGGREPAEPMLPPSA
DGAGAERSRSKARKGDSRPARSQDAQPAPRKAAAKGSGRRSGAAKRGKSRR
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
ttgtatatcaaaaaaacgaaagccgtcgcaaacatcgctcactccgatgacgaaatcgaa
ggcagcgtgcagggccatcgcgacggccacggattcgtgcagcgcgacgacggcgaagcc
gacatctacatccccgccaacgagatgcgggcggtgctccacaaggaccgcgtgcgcgtg
cgcatcgcgcgccatgaccggcgcggccggcccgaggggcgcatcgtcgagatcatcgag
cgcccccatcacccgatcatcggtcgcctgctgcaggaaagcggcgtgtggctggtggcg
ccggaagacaagcgctacggccaggatgtgctgatccccaagggcgcgaccggctcggcc
aagaccgggcaggtcgtggtggtggagctgacggaacctcccgcgctgttcgggcagccc
gtgggccgggtcacggaagtgctgggggaggtggacgatcccggcatggagatcgagatc
gccgtgcgcaagtacggggttccgcacgagttctcgcaggaggcgctggcgcaggccagg
ggcctgcctgacaaggtgcgcgcgcaggacaagcgccaccgcatcgacctgaccgacgtg
ccgctggtgaccatcgacggcgaggatgcccgcgacttcgacgatgccgtgtattgcgag
ccggcgcgcgtcggccgcgccaagggctggcggctgctggtcgcgatcgccgacgtgagc
cactacgtggagacgggcagtcccatcgacgtggatgcctacgaccgggccaccagcgtc
tatttcccgcgccgcgtcatcccgatgctgcccgagaagctgtccaacgggctgtgctcg
ctcaatccggaggtggagcgcctgtgcatggtgtgcgacatgctggtcaccgccaagggc
gaggtgcatgcctaccagttctatccggccgtcatgttcagccatgcgcgcttcacctat
acggaagtggccgcgatcctcgcgaacacgcgggggccggaggcgacgaagcgccgggcg
cgcgttcaggacctgctgaacctgcacgacgtgtaccgcgcgctgctgtcgtcgcggcac
gcgcgcggggccgtggatttcgagaccaccgagacgcagatcgtctgcgacgacaacggc
cgcatcgagaagatcgtgccgcgcacgcgcaacgatgcccaccgcctgatcgaggaggcc
atgctcgcggccaacgtgtgcagcgcggacttcatcgcgcagggcgggcagccggggctc
taccgcgtgcacgaggggcccacgccggagaagcaggagatcctgcgcggctacctgaag
gcgatgggcgtgggcatgacgatcggagacgatccgaagcccggagacttccaggccatc
gcggaggccacgaaggaccgcccggatgcgcagcagatccacacgatgctgctgcggtcc
atgcagcaggccatctacacgcccgtgaacagcggccatttcgggctggcgtacgaggcc
tacacgcatttcaccagcccgatccggcgctatccggacctgctggtgcaccgggtgatc
aaggccatcctgggccagaccaagtaccggctgccggcgctgccggtgccgggggaagcc
cacgccaagctggccaagcgcctcgccgcgcgcgtgccggcgccgacgcagcagccacgc
aagccgctgtccgccgccgcggtccgcgaggtgcaggcctgggaggccgccggcctgcac
tgcagtgccaacgagcgccgcgccgacgaggccagccgcgatgtcgaggcgtggctgaag
tgcaagtacatgcgcgagcacctgggcgaggagttcagcggcctggtcacggccgccacc
agcttcggcatcttcgtgacgctggacgcgatgtacgtcgagggactggtgcacatcacg
gagctgggcggcgagtacttcaagttcgacgaggcgcgccaggagctgcgcggcgagcgc
acgggcatccgctatgccatcggcacgcgggtgcgcgtacaggtgagccgcgtggacctg
gatgggcgccgcatcgacttccggctggtgcgcgagggcgaggaatcgccggcgcccgcg
cgcaattcccgtggccgcggaggtcgcgagccggcggagcccatgctcccgccgtccgcg
gatggcgcgggggcggagcgcagccgcagcaaggcccgcaagggcgattccaggcccgcc
cgctcgcaggacgcccagccggcaccgcgcaaggcggcagccaagggctccgggcgccgc
tccggagcggccaagcggggcaagtcgcgccgctga
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