Menu PATHWAY BRITE MODULE KO GENOME GENES LIGAND DISEASE DRUG DBGET

Data-oriented entry points


Category Entry Point Content DBGET Search

Systems
information
KEGG PATHWAY KEGG pathway maps PATHWAY
KEGG BRITE BRITE hierarchies and tables BRITE
KEGG MODULE KEGG modules MODULE

Genomic
information
KO (KEGG Orthology) Functional orthologs ORTHOLOGY

KEGG GENOME KEGG organisms (complete genomes) GENOME
KEGG GENES Genes and proteins GENES
KEGG SSDB GENES sequence similarity

Chemical
information
(KEGG LIGAND)
KEGG COMPOUND Small molecules COMPOUND
KEGG GLYCAN Glycans GLYCAN
KEGG REACTION Reactions and reaction classes REACTION   RCLASS
KEGG ENZYME Enzyme nomenclature ENZYME

Health
information
KEGG DISEASE Human diseases DISEASE
KEGG DRUG Drugs and drug groups DRUG   DGROUP
KEGG ENVIRON Health related substances ENVIRON
KEGG MEDICUS Japanese drug labels (JAPIC)
FDA drug labels (DailyMed)

KEGG is developed by Kanehisa Laboratories. See Kanehisa et al. (2016) for updates of KEGG.

Subject-oriented entry points

KEGG Cancer
Cancer research
KEGG Pathogen
Infectious diseases, pathogens and antimicrobial resistance
KEGG Virus
Virus research
KEGG Plant
Plant research
KEGG Glycan
Glycobiology research
KEGG Annotation
KO annotation of genes and proteins
KEGG RModule
Architecture of metabolic networks

Organism-specific entry points

KEGG organisms - the list of currently available organisms

Select    (examples) hsa  mmu  sce  eco  bsu  syn

See KEGG GENOME for more details.

KEGG tools for analysis and retrieval

KEGG Mapper
Suite of KEGG mapping tools
KEGG Atlas
Global map viewer
BlastKOALA
Automatic KO annotation (K number assignment) of genomes
GhostKOALA
Automatic KO annotation (K number assignment) of metagenomes
KEGG API
REST-style API for accessing KEGG database [document]
KEGG WebLinks
REST-style URLs for accessing KEGG web pages [document]
KGML
XML representation of KEGG pathways [document]


The following resources are developed and maintained by Kyoto University Bioinformatics Center as part of its GenomeNet service.

KEGG database extensions

KEGG MGENOME
Metagenomes [DBGET]
KEGG MGENES
Genes in metagenomes [DBGET]
KEGG EXPRESSION
Gene expression data [DBGET]
KEGG OC
Computationally generated ortholog clusters

GenomeNet tools for computational analysis

BLAST/FASTA
Sequence similarity search
KAAS
KEGG automatic annotation server
GENIES
Gene network prediction
SIMCOMP/SUBCOMP
Chemical structure similarity search
KCaM
Glycan structure similarity search
PathComp
Possible reaction path computation
PathSearch
Similar reaction path search
PathPred
Reaction pathway prediction
E-zyme
Enzymatic reaction prediction
DINIES
Drug-target interaction network prediction

DBGET/LinkDB retrieval system

DBGET - for keyword search of KEGG and other databases
LinkDB - for searching outside databases linked from KEGG [list of outside databases]


Last updated: October 1, 2016
KEGG GenomeNet Kanehisa Laboratories