Paracidovorax avenae: Acav_2693
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Entry
Acav_2693 CDS
T01445
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aaa
Paracidovorax avenae
Pathway
aaa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Acav_2693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaa03400
]
Acav_2693
Enzymes [BR:
aaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Acav_2693
DNA repair and recombination proteins [BR:
aaa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Acav_2693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADX46602
UniProt:
F0Q2F4
LinkDB
All DBs
Position
3039612..3042422
Genome browser
AA seq
936 aa
AA seq
DB search
MARRSTASGTAQGAPQKAPQKAAPDALADYARKRDFRSTPEPGAEPGDALPRGALRFVVQ
KHWASRLHYDFRLEIDGTMKSWAVPKGPSFDPRDKRMAVQVEDHPVAYNRFEGQIPARQY
GAGRVIIWDKGYWVPLEDPARAWRAGKLKFELHGHKLQGRWTLVRMHGRGNERQPPWLLI
KERDGLERDAVEYSVVDAMPDSVKSLPDLPVPPPAHGRQARGPAPSGTRRTPARGKAPAS
AQSLETTSGRTIRAGTSRRPKKAPLPAALAPQLATLVDGPPTGLAEWMFELKFDGYRILA
RIEGSEVRLITRNGNDWTHRMPGLARAVRALPVESGWIDGEIVVPDRNGIPDFQALQNAF
ESGRRPGSSAAGTPDGGAVDRSGLVFYVFDLPFLNGHDLRGLPLAERREALRTLVAEAGS
DTVRFSDAFEASPGELIASACRLGFEGVIGKRVSSAYMSGRSADWIKLKCGQRQEFVIGG
YTDPQGTRTGLGSLLLGVHGDDGQLHYAGNVGSGFSERTLATLHAQLRSLATDRSPFAEG
TQVGRKAHWVKPQLLAEVAFAGWTQTRHVRQAVFRGLREDKPPREIVRETPAPAAAVAGT
PSTPPAAPRRASSDATPSRARSTMTSRRTASAPSPAAPTSSLRVTHGDRVIDAASGTTKL
ELVRYYALVAPLMMEHLLQRPVSVVRAPEGVGGELFFQKHPEHGSVDGVRTLDPALDPGH
PPLAEIAGPEGLPAWAQMNTIEFHSWNARSDRIDRPDRIAFDLDPGEGVPWDKVQEAATL
MRVMLTELGLPGFLKTSGGKGLHVVVPIKRLHGWDAVKGFSQAVVQHMARTIPQLFVAKS
GPRNRVGKIFVDYLRNGFGATTVSAWSARARPGLGISVPLRWDELGALSSSTEWTVATVE
ERLREGNASWEGYDKAAVSITQAMKMLGYEAPRGGR
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcacgacgctccacagcctccggcactgcgcagggcgcaccgcaaaaagcgccgcaa
aaggcggcaccggatgccctcgcggactacgcccgcaagcgcgatttccgcagcaccccc
gagcccggagcggagccgggcgacgccctgccgcgcggcgcgctgcgcttcgtggtgcag
aagcactgggcgagccgcctgcattacgacttccggctggaaatcgacggcaccatgaag
agctgggcggtgcccaagggcccgagcttcgaccccagggacaagcgcatggccgtgcag
gtggaggaccacccggtcgcctacaaccgcttcgaaggccagatccctgcgcggcagtac
ggagcgggccgcgtcatcatctgggacaagggctactgggtgccgctggaagaccccgcc
cgtgcgtggcgcgcgggcaagctcaagttcgaattgcacggccacaagctccagggtcgg
tggacgctggtgcgcatgcacggccggggcaacgagcgccagccgccgtggctgctcatc
aaggagcgcgacgggctggaacgcgacgccgtcgagtacagcgtggtggacgccatgccg
gacagcgtgaagtcgctgcctgacctgcctgtgcccccgcccgcgcacggcaggcaggcc
cgcggccctgccccatccggcacccgccggacgcccgcccgcggcaaggctccggcttcc
gcgcagtccctggagacgacttcaggccggacgattcgggccggtacttcccggcgcccc
aagaaggccccgctgcccgcggcactggcgccgcaactggccacgctggtggatggcccg
cccaccggcctggccgaatggatgttcgagctcaaattcgacggctaccgcatcctcgcg
cgcatcgagggcagcgaggtgcgcctcatcacccgcaacggcaacgactggacccaccgc
atgcccgggctggcgcgcgccgtgcgcgcgctgccggtggagtccggctggatcgacggc
gagatcgtggtgcccgaccggaatggcatccccgatttccaggcgctgcagaatgctttc
gagagcgggcgccggcctggaagcagcgcggcgggcaccccggacggcggcgcggtggac
cgcagcggcctggtcttctacgtgttcgacctgcccttcctcaatggccacgacctgcgg
ggcctgccgctggcggagcgcagggaggctctgcgcacgctcgtggccgaggcgggcagc
gacaccgtgcgcttcagcgacgcgttcgaggcgtcgcccggcgaattgatcgcctccgcc
tgccggctcggcttcgagggcgtgatcggcaagcgcgtgtcatcggcctatatgtccggc
cggtcggccgactggatcaagctcaagtgcggacagcggcaggagttcgtgatcggcggc
tatacggacccgcagggcacgcgcaccggcctcggctcgctgctgctcggcgtgcacggc
gacgacggacagctgcactatgcgggcaacgtaggctccggcttcagcgagcgcaccctg
gcgacactgcacgcgcagctgcgctcgctggccacagaccgcagccccttcgccgaaggc
acgcaggtgggccgcaaggcgcactgggtcaagccgcaactgctggcggaggtggccttc
gcgggctggacgcagacgcgccatgtccgccaggcggtcttccgcggcttgcgcgaggac
aagcctccgcgcgagatcgtgcgcgagacgcccgcaccggccgccgcggtggcgggcacg
ccgtccaccccgccggcggccccgcgccgtgcttcatccgacgccacgccctccagggca
cgctccaccatgacctcccgccgaaccgcatccgctccttcgccggccgccccgacctcc
tcgctgcgcgtgacccacggcgaccgcgtgatcgatgccgcgagcgggaccaccaagctg
gagctggtgcgctactacgccctggtcgcgcccctgatgatggaacacctgctccagcgc
cccgtctcggtcgtgcgggctccggaaggcgtgggtggggaactcttcttccagaagcat
ccggagcacggctcggtggacggcgtgcgcacgctggatccggcgctggatcccggccat
ccgcccctggccgagatcgcggggcccgaaggcctgcctgcctgggcgcagatgaacacc
atcgagttccacagctggaacgcccgcagcgaccgcatcgaccggcccgaccggatcgcc
tttgacctcgaccccggcgaaggcgtgccctgggacaaggtgcaggaggccgccacgctg
atgcgcgtgatgctcacggaactgggactgccgggctttctcaagaccagcggcggcaag
gggctgcacgtggtcgtgcccatcaagcgcctgcacggctgggatgcggtgaagggcttt
tcgcaggcggtggtgcagcacatggcgcgcaccatcccgcagctgttcgtggccaagagc
gggccgcgcaatcgcgtggggaaaatcttcgtggattacctgcgcaacggcttcggcgcc
accacggtgagcgcatggtccgcacgcgcccggcccggcctgggcatttccgtgccgctg
cgctgggatgaactgggcgcgctctccagcagcaccgaatggaccgtggccaccgtggaa
gagcggctgcgcgaaggcaacgcgtcctgggagggctacgacaaggcggccgtctccatc
acgcaggcgatgaagatgctcgggtacgaggcgccgcgcggcgggcgctga
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