Achromobacter aegrifaciens: RA224_02165
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Entry
RA224_02165 CDS
T09343
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aaeg
Achromobacter aegrifaciens
Pathway
aaeg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aaeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RA224_02165 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aaeg03400
]
RA224_02165 (ligD)
Enzymes [BR:
aaeg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RA224_02165 (ligD)
DNA repair and recombination proteins [BR:
aaeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RA224_02165 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WLW62242
LinkDB
All DBs
Position
460401..462926
Genome browser
AA seq
841 aa
AA seq
DB search
MADSLKKYREKRNFAVTPEPADGGDSGGEGLAFVIQKHWASHLHYDFRLELDGAMKSWAV
PKGPSFDPSIKRMAVQVEDHPIAYNQFEGTIPKGQYGAGKVIIWDEGRWTPIGDPRKAYK
AGHLKFTLEGVKMRGRWALIRMKGKEGERQPPWLLIKESDEYARPERDFSVVDELPDSVV
PLRKKKAATARSEPPIRAAKAAAAVAALPGKAAALPASLKPQLATLVEGVPRGADDWSYE
MKFDGYRILARLDDGSVKLYTRNGHDWTARMPRLAQELAALQIANAWIDGEIVVLTREGV
PSFQALQNAFDAASTADIVFYAFDLPYVTGRDLRDEPLRLRRDLLRRIIATSQSRHVKFS
EAFDKPAADLVASACKLGLEGIIGKRLSAPYVSRRTDDWIKIKCTRRQEFVIVGYTEPKG
SRKGFGALLLAVHEPDGGLRYAGNVGTGFDDKTLQDLHRKLAGIEQKASALTQGKPRALK
QVHWVQPTLVGEVSFGEWTGDGHVRHSTFRGLRTDKPPKKITREVAMPAEKISTRNRPAK
AIKAGAETSAKGMKLSNPDRVIDPSSGATKLDLARYYALVAPLMMPHLRGRPVSFVRAPA
GIEGEHFFQRHSESSIPGVLALPERLYPGHPPLMEISNVAAILAAAQLNVVEFHTWNALK
TAIGKPDRMVFDLDPGAGVDWPAVQQGAELVRVLLQELGLHGWLKTSGGKGLHVVVPIRK
QYGWDAVKDFSEAMVRHLAQTLPKLFVAKSGPKNRVGKIFADYLRNGFGATTVAAWSARA
RPGLGVSVPVRWDELAGLKGSAQWTIANIHTRLDAGNEPWDDYAPQAIGRAMKQLGVEPR
S
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagcctgaagaaatatcgcgagaagcgcaatttcgccgtcacgcccgaacct
gcggacggcggcgattctgggggtgaaggcctggcattcgtgattcaaaaacactgggcc
agccacctgcactatgacttccgcctggaactggacggcgcgatgaaaagctgggcggtg
ccgaaggggccgtcgttcgatccttccatcaaacgcatggcggtgcaggtcgaagaccat
cccatcgcatacaaccagttcgaaggcaccatccccaagggacagtatggcgccggcaag
gtgatcatctgggacgaggggcgctggactccgatcggcgatccccggaaggcatataag
gctggccatctgaagttcacgctcgaaggcgtgaagatgcgcgggcgctgggcgctgatc
cgcatgaagggcaaagagggcgagcgccagccgccctggctgctgatcaaggaaagcgac
gagtacgcgcggcctgagcgggatttcagcgtggtggacgagctaccggacagcgtggtg
ccgttgcgcaagaagaaggcggcgactgcgcgcagcgaaccgccaatccgcgccgcgaag
gcggcagcagccgtggcagcgttaccgggcaaggccgccgccctgcctgcatcgctcaaa
cctcagctggccaccctggtcgagggcgtgccgcggggcgcggacgactggtcctacgaa
atgaagttcgacggctaccggatcctggccaggctggacgacggcagcgtgaagctgtac
acgcgcaacggccacgactggacggccaggatgccgcgcctggcccaggagctggcggcg
ctgcagatcgccaatgcctggatcgacggcgagatcgtggtgctgacgcgcgaaggcgta
cccagctttcaggccttgcagaacgccttcgatgccgccagtacggcggacatcgtcttc
tatgcgtttgacctgccttacgtcacggggcgcgatctgcgcgacgagccgctcaggctg
cggcgggatctgctgcggcggatcatcgccacgagccagagcaggcacgtgaagttcagt
gaggccttcgacaagccggcggcagacctggtcgcttcggcctgcaagctgggcctggag
ggcatcatcggcaagcggctgtccgcgccctacgtgtcgcgccgcacggacgactggatc
aaaatcaagtgcaccagacgccaggagttcgtcatcgtgggttacaccgagcccaagggc
agccgcaagggcttcggcgcgctgctgctggcggtgcatgagccggatggcgggctgcgc
tacgccggcaacgtgggcacagggttcgacgacaagacgctgcaggacctgcatcgtaag
ctggccggcatcgaacaaaaagccagcgcgttgacccaaggcaagccgcgcgccctcaag
caggtccactgggtccagcctacgctggtaggtgaggtttcgttcggagaatggactggc
gacggccatgtacgccattcgaccttccgcgggctgcggactgacaaaccacccaagaag
atcacgcgcgaggttgccatgccggctgaaaagatatccacccgcaatcgccccgccaaa
gccataaaagcgggcgctgaaacgtctgcgaaggggatgaagctgtccaatcccgatcgc
gtcatcgatccctcttcaggcgcgaccaagctcgacctggcgcgctactacgcgctggtg
gcgccgctgatgatgccgcacctgcgcggccgcccggtttcgttcgtcagggcgcccgcg
gggatcgagggcgagcatttcttccagcggcattcggagtcttccatcccgggggtgctt
gcgctgcctgaacgcctgtacccggggcatccgccgctcatggaaatatcgaacgtagcg
gcgatactcgctgctgcccagctgaacgtcgtggagttccacacgtggaatgcgctcaag
accgcgatcggcaagccggaccggatggtgttcgacctggaccctggagcaggggtggat
tggcctgcggtgcagcagggcgcggaactggtgcgcgtgctgctgcaggaactgggcctg
catggctggctgaagaccagcggcggcaaggggctgcatgtggtcgtgccgatccgcaag
caatatggctgggacgccgtgaaggacttttccgaagccatggtgcgccatctggcgcaa
acgctgccgaagctgttcgtcgccaagagcggtcccaagaaccgtgtgggcaagattttc
gccgattacctgcgcaacggcttcggcgccacgacggtggcggcctggtcggcccgcgcc
cggcccggcctgggcgtgtccgtacccgtccgctgggacgaactggcggggctgaaaggg
tcggcgcaatggaccatcgccaacatccacacccgcctggatgcgggcaacgagccttgg
gatgattacgcgccccaggccatcggccgggccatgaagcagctcggggtcgagccgcga
tcctga
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