Aminobacter aminovorans: AA2016_0403
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Entry
AA2016_0403 CDS
T04343
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aak
Aminobacter aminovorans
Pathway
aak03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AA2016_0403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aak03400
]
AA2016_0403
Enzymes [BR:
aak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AA2016_0403
DNA repair and recombination proteins [BR:
aak03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AA2016_0403
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AMS39342
LinkDB
All DBs
Position
complement(409632..410498)
Genome browser
AA seq
288 aa
AA seq
DB search
MPPCIPTLVDKPPEGDRWTHEIKYDGYRTQFHLAGGRARAFTRNGHDWSMKYAAVLAAAR
ELIPRDAIVDGEMVVQDESGRHSFKKLASAIRWEGSSLVFYAFDLLCLDGNDLRKQRCED
RRLRLHELLGDPRPTCPLQFSQAFEGSGAEFFAAVEKMDLEGIVSKRRASVYRGGPSKHW
LKTKSYITGEFVVIGYEQKRGAAMSLLLAEETDAVMRFVGRAIPVIRQDRRDEFWQTLQF
LHTSHFATPIGAGNKAAVPVHPVLKVMAKHLKGEEKLRHATVTEVLVP
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgtgtatcccgacgttggtcgacaagccgcctgaaggcgaccgctggacgcac
gaaatcaaatatgacggctaccgcacgcagttccaccttgccggcggtcgcgcgcgcgcc
ttcacgcgcaatggccacgattggtcgatgaagtatgcggctgtgctcgccgccgcgcgc
gagctgatcccacgcgacgcgatcgttgacggcgagatggtggtacaggacgaaagcggc
cgacacagctttaagaagcttgccagcgccatacgctgggaaggctcgagcttggtgttc
tatgcctttgatctcctctgcctcgacggcaacgacctccgcaagcaacgctgtgaagac
cgacgactacggctgcatgagttgctcggagatccgcggcccacctgcccgctgcaattc
agccaggcgttcgaaggctccggcgccgagttctttgccgctgtcgaaaagatggatctc
gaaggcatcgtgtccaagcggcgcgccagtgtctatcgaggcggtccgtcaaagcactgg
ctgaagaccaagagttacatcacaggcgaatttgtagtgattggctatgagcaaaaacgg
ggcgctgctatgtccctcctcctcgccgaagagactgacgctgttatgcgctttgtcggc
cgcgctattcccgtcatccgccaagatcggcgcgacgagttttggcaaacgctgcagttc
ctgcacacaagccacttcgctacaccaatcggcgccggcaacaaggctgcagtaccggtg
catccggtcctaaaggtcatggccaagcatctaaagggcgaggagaaacttcggcacgca
acggtgactgaggtgctggtaccttga
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