Alternaria alternata: CC77DRAFT_1016314
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Entry
CC77DRAFT_1016314 CDS
T05291
Name
(RefSeq) hypothetical protein
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
aalt
Alternaria alternata
Pathway
aalt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CC77DRAFT_1016314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalt03019
]
CC77DRAFT_1016314
Messenger RNA biogenesis [BR:
aalt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CC77DRAFT_1016314
mRNA degradation factors
5'-3' decay
Lsm complex
CC77DRAFT_1016314
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
29109788
NCBI-ProteinID:
XP_018390760
JGI:
1016314
UniProt:
A0A177E2X1
LinkDB
All DBs
Position
Unknown
AA seq
235 aa
AA seq
DB search
MAFNQRPPRGPAQAGGAPNMAPDFNAMLQRSMQAPGQLQPQVSEPPRGPSPSIGYEGVYS
ATPPPQHGPNVLGGARGQAPPPVLPVDLPPQAFLTSAMLLDMVDKKVDVLLRDEKEYIGI
LRSYDQFANLVLTECYERIAARNPDASPASDPSVPRWLIHDVKLPGVMTVRGENVTICAT
VDLDREEHPKGAMFAEEDQVRALAAAQKAEKKETDLRKAKALKQAGIEPGFGMQG
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atggctttcaaccagcgcccaccccgaggccccgcgcaggctggaggtgccccgaatatg
gccccggacttcaatgccatgcttcagcgctctatgcaggcgcctggacagcttcagcct
caagtctcagaacccccacgagggccatcgccgtctattggttacgaaggcgtatatagt
gccactccaccaccacagcatggccccaatgtacttggtggtgcacgagggcaggcgccg
ccgccagtgttgcccgtcgacctcccaccgcaggcctttctgacgtcggcgatgctgtta
gatatggtggacaagaaggttgacgtattactgcgcgacgagaaagagtatattggtata
ttacgttcatacgaccaattcgcgaacctcgtcctcaccgagtgctatgagcgaatagca
gcccgcaaccccgacgcatcacctgcgtctgatccctctgtcccacgttggctgatacac
gacgtcaaactccctggtgttatgactgtaagaggcgagaacgtcaccatatgcgcaacc
gtcgacctcgaccgagaagaacaccccaaaggcgcaatgttcgccgaagaagaccaagta
cgggcgctggcggcagctcaaaaagcagagaaaaaggaaaccgatttacggaaagccaag
gcgctgaagcaggctggtattgagcctgggttcggtatgcaagggtag
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