Alternaria alternata: CC77DRAFT_392504 Help Entry CC77DRAFT_392504  CDS       T05291                                  Name (RefSeq) antiviral helicase   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism aalt  Alternaria alternata Pathway aalt03018   RNA degradation Brite KEGG Orthology (KO) [BR:aalt00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     CC77DRAFT_392504  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:aalt03019]     CC77DRAFT_392504 Enzymes [BR:aalt01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      CC77DRAFT_392504 Messenger RNA biogenesis [BR:aalt03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      CC77DRAFT_392504   mRNA degradation factors    3'-5' decay     Ski complex      CC77DRAFT_392504 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel MTR4-like_stalk Helicase_C ResIII DUF6211 Motif Other DBs NCBI-GeneID:  29117099 NCBI-ProteinID:  XP_018381632 JGI:  392504 UniProt:  A0A177DA98 LinkDB All DBs Position Unknown AA seq 1282 aa AA seqDB search MEALSGELEKLRLHSSSLGEDGIDSIAGEQRPPKRQRKTKDVIKKELEQEFLTPSKSFDT QWLNQLQQRWDAPTNYRSLFQIAPTQTRTIIRFTREGLEGRVTGYKEVTVPANSATAKNS TSLLRKPANRAEFVRGAAGFFPFAPGGLDGVEAVAAIEDEAIQQQEDANGKRVGGLDRVI NFSAEGGLLEVPPGFTRGLDFQKKPTTDAKAAQEVEDTLAEAGAAPRDMDADDEETTEKA GANGQEPDEDQPGDDEIDALLPVEFPALAPHGPLAMSSGRKGGREWAHMVDIDRDITNFK ELVPDMAREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAI YTSPIKALSNQKFRDFRQTFDDVGILTGDVQIRPEASCLIMTTEILRSMLYRGADLIRDV EFVIFDEVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKKKDIYV ISTPKRPIPLEHYLWAGKDIHKIVTADKKFIDNGWKAANDVLSGKDKIKEAPANAAQAGR GSGGRGGPPARGGQNQRGRGQQGGGRGAPRGGGPPAARGRGNIARTGRGGGRTTAAQDRN IWVHLIQHLRNKDLLPACIFVFSKKRCEENAEALSNIDYCNAAEKSAIHMTIEKSLARLS KEDRDLPQIKRLRELLSRGIAVHHGGMLPIVKEVVEILFAKTLVKVLFATETFAMGLNLP TRTVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRGLDTVGTVIICAPGADEAPPAARLR QMMLGEPTKLRSQFRLTYNMMLNLLRVEALKIEEMIKRSFSENATQALLPEHQGKVKVSE AELEKIKREPCDTCDIDLEACHQSCEDYKRLTNEMHLSLLINPIGRRALAKNRLIVYKRD NKRTAGMLMQDGTSKGNEPTVKVLEVAQHQDRKPDDLLPYVGPFAKWFRKLPNNPKDLIL KAAYVPLNDIECFTKTIIDVPESIQNLGRKVSKDTLKLAQDQFLPLCGSWDYEDWDEYDY SKIKSLKFRELAEARMKEGQNAVSKECLKCPNFLKHFAQEHDQWLIKENILALRQLMSDQ NLQLLPDYEQRIHVLKDLGFIDEGSRVELKGKVACEIHSADELVLTELVLENVLAEYEPE EIVALLSAFVFQEKTDVEPTLTANLERGVAKIVEISEKVNKIQTLHQVILSADDSNDFVS KPRFGMVEVVYEWARGMSFNRITDLTDVMEGTIVRVITRLDETCREVKNAARIIGDPTLF QKMGTCQELIKRDICNCASLYL NT seq 3849 nt NT seq  +upstreamnt  +downstreamnt atggaagctttgtctggagaattggagaagctgcggctgcacagcagtagcctcggcgaa gatgggatagactccatagctggcgaacaacggccaccgaagcgacaacgcaaaaccaaa gatgtcatcaaaaaggaactagagcaagaattcctgacaccctccaagtctttcgacacg cagtggttgaaccagcttcagcagcgctgggatgcacccaccaattaccgcagcctgttc cagatcgccccaacccagacccgaaccatcatccgcttcacgcgcgaggggctagagggc cgtgtcacgggatacaaagaagtcacagttccagcaaactcggcaacagccaagaactcg acgtctcttctcaggaagcctgccaacagagctgaattcgtgcgtggagcagcaggcttc tttcctttcgcacctggcggtcttgatggagtggaagcggtagctgcaatcgaagatgag gcaattcaacagcaagaggatgcgaatgggaaacgggttggtggccttgacagagtcatc aacttcagtgctgaagggggcctgttggaggtaccgcctgggtttactcgtgggctcgac ttccagaaaaagcccaccacagatgccaaggctgcgcaagaggtcgaagacaccttagca gaggcgggtgcagcccccagagatatggatgccgatgacgaagagaccaccgagaaggcc ggcgcgaacggccaagaacctgacgaagaccagcctggagacgacgagattgacgccttg ctaccagtagagttccctgcgttggctcctcacggcccgcttgccatgagttctggaagg aaaggcggaagagagtgggctcatatggttgacatcgatcgcgacatcaccaacttcaag gaactcgtgccggatatggcgcgcgagtggcccttcgagctcgatactttccagaaagaa gcggtctaccatcttgagaatggcgattcagtgttcgtagccgcacatacgtccgctggc aagacagtggtcgcagagtacgcgatcgcactcgctgccaagcacatgaccaaagctatt tacacatctcctatcaaagctttgagtaaccagaagttccgcgatttccgccaaacattc gacgatgtcggcattcttactggagatgtgcagatcagacccgaagctagctgtctcatc atgaccaccgagatcctccggagtatgttgtatcggggagcggatcttatccgagatgta gagtttgtcatatttgacgaagtacactacgtcaatgatctggagcgtggcgttgtctgg gaggaggtcatcatcatgttgccagagcatgtgactctcatcctactatccgcaactgtc cccaacacgtatgagttcgcgtcatgggttggtcgcacaaagaagaaggacatctacgtc atctccaccccaaagcgtcccattcctctcgaacattatctttgggctggaaaagacatc cacaagatcgttacagcagacaagaaattcatcgacaacggctggaaagctgcaaacgat gtcttgtccgggaaagacaagatcaaagaagctcctgcgaatgcagcccaagctggtaga ggcagtggtggtcgcggaggaccgcccgcccggggaggccagaatcaacgtggaagaggt caacaaggtggcgggcgtggtgcgcctcgaggcggaggaccaccggctgcaaggggtcgt ggcaacatcgccagaaccggtcgtggtggaggtcgaacaacagccgcgcaagatcggaat atctgggtccacctcatacagcatcttcgaaacaaagacctgttgccggcttgtatattc gtcttttccaagaagcgctgcgaggagaatgccgaggcgctttcaaacatcgactattgc aacgctgctgagaagagcgcgatacacatgaccatcgagaagtcgctggctagactgagc aaggaagaccgtgaccttcctcagatcaagcgcctaagagagttgctcagccgaggcatt gctgtccatcacggtggaatgttacccatcgtcaaagaggttgtagagattctgtttgca aagacacttgtcaaggttctctttgccacggagactttcgcgatgggtctcaatttaccc actagaaccgtagtgttctctggtttccgcaaacacgacggacgagagttccgcgacttg ctccctggcgaatacactcagatggctggtcgcgcaggacgaagaggactcgacacagtc ggcactgtaatcatatgtgcgcccggagccgacgaggcaccaccggcagccagactccgt cagatgatgttgggtgagcctactaagctcagatcacagtttcgtctgacgtataacatg atgctcaaccttttgcgtgtagaggctttgaagatcgaagagatgatcaagcgaagtttc agcgagaatgccacccaagcgctgctacctgaacatcaaggcaaggtcaaagtctcggag gctgagctggagaagatcaagcgcgagccttgtgatacctgcgacatcgacctagaggcc tgccatcagtcttgtgaagactacaagagactcactaacgagatgcacctgagtctactc attaaccctattggacgacgggctttggcgaagaatagattgattgtctataagagggac aataaacgcaccgcgggtatgctaatgcaagatggtactagcaaaggcaacgagcccacg gtcaaagtcttagaggtggcgcagcaccaagatcgcaagcctgacgacctcttgccatat gtcggtccttttgcaaagtggttccgcaagttaccgaacaaccccaaggatctgatccta aaggcagcctacgtgcccctgaacgatatcgaatgctttaccaagaccatcatcgatgtg cccgaatccattcagaacctgggtcggaaggtatccaaggataccttgaagttggcccaa gatcagttcctgcccttgtgtggatcttgggactatgaagactgggatgaatacgactac agcaagatcaagagcctcaagttccgcgaactggcggaagcccgcatgaaggagggtcag aatgcggttagcaaagaatgcctgaagtgtccaaacttcttgaaacactttgctcaagag catgatcagtggcttatcaaagagaacatccttgccctccgccagctcatgtcagatcag aatttacagctactccctgactatgaacagcgcatacacgtactcaaggatctcggcttt attgatgaaggttctcgcgtggagctgaagggcaaggtagcttgcgagatccactcggcc gacgagctggtccttaccgaactcgttttggagaacgtcctcgccgagtacgaaccggaa gaaattgtcgcactactctcggcctttgtcttccaagagaagaccgacgtagagcctacg ctaacagcaaatctggaacgcggtgtcgccaagatcgttgagatctctgagaaggtcaac aagatccaaactctgcatcaggtcatcctctccgcagatgactcgaacgactttgtcagc aaaccccgcttcggcatggtcgaagtcgtgtatgagtgggcgaggggtatgtcattcaat cgcataacggacctgacagatgtcatggaaggcactattgtccgcgtcatcacccggcta gacgagacgtgccgggaggtcaagaacgcggctcggattatcggcgacccgactttgttc caaaaaatggggacgtgtcaggaactcatcaaacgggacatttgcaactgtgcaagcttg tacctgtaa

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