Alternaria alternata: CC77DRAFT_940038
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Entry
CC77DRAFT_940038 CDS
T05291
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
aalt
Alternaria alternata
Pathway
aalt03018
RNA degradation
aalt03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aalt00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CC77DRAFT_940038
09123 Folding, sorting and degradation
03018 RNA degradation
CC77DRAFT_940038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aalt03019
]
CC77DRAFT_940038
03041 Spliceosome [BR:
aalt03041
]
CC77DRAFT_940038
Messenger RNA biogenesis [BR:
aalt03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CC77DRAFT_940038
mRNA degradation factors
5'-3' decay
Lsm complex
CC77DRAFT_940038
Spliceosome [BR:
aalt03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CC77DRAFT_940038
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
FoP_duplication
Motif
Other DBs
NCBI-GeneID:
29120302
NCBI-ProteinID:
XP_018383827
JGI:
940038
UniProt:
A0A177DFZ9
LinkDB
All DBs
Position
Unknown
AA seq
132 aa
AA seq
DB search
MSERGAFRGRGGGRGGDRGGRGGGRGGGAQAGGAGGQTERPKKENILDLSKYMDKQITVK
FSGGREVIGTLKGYDQLMNLVLDEVKEALTDEDGNIRYRKLGLIVARGTLLVVISPVDGS
EEIPNPFIQEEE
NT seq
399 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagcgaggcgcattccggggccgcggtggaggtcgaggaggcgaccgcggcgga
aggggaggtggccgtggtggcggtgcacaggctggaggtgctgggggacagacggagcgc
ccaaagaaggagaacattcttgacctgagcaagtacatggacaagcagatcacagtcaag
ttcagcggaggacgagaagtcattggcacactcaaaggctacgaccaactcatgaacctc
gtcctagatgaggtcaaggaagcattgactgacgaggacggcaacatccgctatcgcaag
ctcggcctcattgtcgcacgcggcaccctcctagtcgtcatctcgcccgtggacggaagc
gaagagatcccgaaccccttcatacaggaagaggaatga
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