Arvicola amphibius (Eurasian water vole): 119812350
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Entry
119812350 CDS
T08327
Symbol
Col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04151
PI3K-Akt signaling pathway
aamp04510
Focal adhesion
aamp04512
ECM-receptor interaction
aamp04820
Cytoskeleton in muscle cells
aamp04926
Relaxin signaling pathway
aamp04933
AGE-RAGE signaling pathway in diabetic complications
aamp04974
Protein digestion and absorption
aamp05146
Amoebiasis
aamp05165
Human papillomavirus infection
aamp05200
Pathways in cancer
aamp05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
119812350 (Col4a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119812350 (Col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119812350 (Col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119812350 (Col4a1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
119812350 (Col4a1)
09154 Digestive system
04974 Protein digestion and absorption
119812350 (Col4a1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
119812350 (Col4a1)
09162 Cancer: specific types
05222 Small cell lung cancer
119812350 (Col4a1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
119812350 (Col4a1)
09174 Infectious disease: parasitic
05146 Amoebiasis
119812350 (Col4a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
119812350 (Col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aamp04147
]
119812350 (Col4a1)
00536 Glycosaminoglycan binding proteins [BR:
aamp00536
]
119812350 (Col4a1)
Exosome [BR:
aamp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
119812350 (Col4a1)
Glycosaminoglycan binding proteins [BR:
aamp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
119812350 (Col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
119812350
NCBI-ProteinID:
XP_038182874
LinkDB
All DBs
Position
4:155886845..155998518
Genome browser
AA seq
1671 aa
AA seq
DB search
MGPRFSFWLLLLPAALLLHEERSRAAAKGDSGCGGSGCGKCDCHGVKGQKGERGFPGLQG
VIGFPGMQGPEGPHGPPGQKGDTGEPGLPGTKGTRGPPGIAGYPGNPGLPGIPGQDGPPG
PPGIPGCNGTKGERGPLGPPGLPGFTGSPGPQGPPGIKGDPGEIIGHTPGIPLKGERGFP
GIPGTPGLPGVPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGSSFQGPKGDKGEQGVSG
PPGVPGQAQVKEKGDFAPTGEKGQKGEPGFQGAPGLGEKGEPGKQGPRGKPGKDGEKGEK
GSPGFPGDSGYPGLPGRPGPQGEKGETGLPGPPGSVIGTMPLGEKGERGYPGTPGLRGEP
GPKGYPGIQGQPGPPGFSIPGQIGAPGFPGERGEKGDQGFPGVSLPGPSGRDGTPGPPGP
PGPPGQPGHTNGIVECQPGPPGDQGPPGVPGQPGLIGEVGQKGEKGEGCLACDTEGLRGP
PGPQGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIFFDMR
LKGDKGDPGFPGQPGMPGRAGTPGRDGHPGLPGPKGSPGLVGLKGERGPPGGVGFPGSRG
DIGPPGPPGIGSIGPIGEKGNAGFPGNPGSPGLPGPKGEAGKVVPLPGPPGAAGLPGSPG
FPGPQGDRGFPGTPGRPGIPGEKGAVGQPGIGFPGPPGPKGVDGLPGDIGQPGSPGRPGF
NGLPGNPGPQGQKGEPGIGLPGLKGQPGLPGIPGTPGEKGNIGGPGVPGEQGSIGPPGLQ
GIRGDPGPPGVQGPAGPPGVPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDM
PGPKGDKGSQGLPGLTGQSGLPGLPGQQGTPGLPGFPGSKGEMGVMGTPGQPGSPGPAGT
PGLPGEKGDHGLPGSSGPRGDPGFKGDKGDVGLPGMPGSMEHVDMGSMKGQKGDQGEKGQ
IGPTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGLSGTPGAPGLPGPKGSVGGMGM
PGLPGQKGVPGIPGQQGVPGSPGEKGAKGEKGQSGVPGIGIPGPPGDKGDQGLAGFPGSP
GEKGEKGSAGTPGMPGSPGPRGSPGSIGYPGSPGLPGEKGDKGLPGLDGVPGVKGEAGLP
GTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGNKGDKGSKGEVGFPGLAG
SPGIPGAKGEQGFMGPPGPQGQPGLPGTPGHPVEGPKGDRGPQGQPGLPGHPGPMGPPGF
PGLNGPKGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGQ
KGLPGLQGVKGDQGDQGIPGPKGLQGPPGPPGPYDVIKGEPGLPGPEGPPGLKGLQGPPG
PKGQQGVTGSVGFPGPPGVPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGQPGSMGPPG
TPSVDHGFLVTRHSQTTDDPLCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFS
TMPFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPISGDNIRPFISRCAVCEAPAMVM
AVHSQTIQIPQCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHG
RGTCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5016 nt
NT seq
+upstream
nt +downstream
nt
atggggccccggttcagcttctggcttctactgctgcccgccgcccttctgctccacgag
gagcgcagccgggccgctgcgaagggtgactccggctgtggcggctctggctgtgggaaa
tgtgactgtcatggcgtcaagggacaaaagggagaaagaggctttccagggttacaaggt
gtcattgggtttcctgggatgcaaggacccgaggggccacatggaccaccaggacaaaag
ggtgatactggagaacctggacttcctggcacaaaagggacaagaggaccccctggaata
gctggctaccctgggaaccccgggcttcctggtattcctggccaagatggtccgccaggt
cccccaggtatcccaggatgcaacggtacaaagggagagagaggtccgcttggtcctcct
ggcttgcctggattcaccgggagtcctggaccacaagggccgccaggaattaagggagat
cctggtgaaattatcggccacacccctggaatacctttgaaaggggaaagaggattccct
ggcatccctggcactccgggcctaccgggagtgccagggctccagggacctgttggtcct
ccaggatttactgggccgccgggtccccccggccctcctggcccccctggagaaaagggg
cagatgggctccagcttccaaggaccaaaaggtgacaagggtgagcagggggtcagcggc
ccccctggagtaccgggacaggcacaagttaaagaaaaaggagactttgccccaacagga
gaaaagggtcagaaaggtgaacccggattccagggagccccagggcttggagagaaaggt
gaaccagggaagcaagggccacggggaaaacctggaaaagacggcgagaagggagaaaag
gggagtccgggctttcctggtgattccgggtacccaggactcccaggccggccaggccct
cagggagagaagggtgaaactggacttccaggccctcctggatctgtgataggcaccatg
ccgctgggagagaaaggggagcgaggctaccccggaacgccagggttaagaggagagcca
ggccctaaaggttaccctggaatacaaggccagccaggccctccaggcttctccattcca
ggccagattggtgctcccggcttcccaggcgaaagaggagaaaaaggcgaccagggattt
ccaggagtgtctttaccgggacccagtggaagagatggaactccagggcctcccggccct
cctgggccccctggacagccaggccatacaaatggcattgtggaatgccagcctggacct
cctggggaccagggtcctcccggggtaccaggacagcccggtttgataggcgaagttgga
cagaaaggtgagaaaggagaaggctgccttgcttgtgacacagaaggactccgaggcccc
cctggaccacaggggcccccaggagagattggtttccccggacagccaggggccaaaggt
gaccgtggtctgcctggcagagatggtcttgaaggattgccgggtccacaaggtgcacca
gggctcatgggccagcctggagctaagggagaacctggcgagatattttttgacatgcga
ctcaaaggtgacaaaggagacccaggtttcccaggacaaccaggcatgccaggaagagcg
ggaacccctggaagagatggccacccaggacttcctggacccaaaggctccccgggcttg
gtaggattgaaaggagaacgagggccccctggaggagttggcttccccggcagtcgcggt
gacattggcccacctgggcccccaggaatcggttccattggtcccattggtgaaaaagga
aatgcaggctttcctggaaacccagggtccccaggccttccaggtccaaagggtgaagca
ggaaaggttgtcccactccctggcccccctggagctgcaggccttccaggatcccctggg
ttcccagggccacaaggtgaccgaggcttcccaggaaccccaggacgaccaggcatccca
ggagagaagggtgctgtgggccagccagggattggatttcccgggcctccaggccccaaa
ggtgttgacggcttgcctggagacatagggcaacctgggagtccaggccgccctggattt
aatggcttacctggcaacccagggccacaaggccaaaagggagaacctggcattgggcta
ccaggactcaaagggcagccaggcctgccaggcattcctggtacacctggagagaagggc
aacatcgggggaccaggcgtccctggagagcaaggatcgattggcccccctggactccag
gggatcagaggtgacccaggacctcctggagttcaaggccctgcaggtccaccaggggtt
cctggaataggaccacccggagccatgggccctcccggaggacagggacctccagggtca
tcaggtccacctggagtcaaaggagagaagggtttccctggattcccaggactggacatg
cccggccccaaaggagataaaggctctcaaggacttcctggcctcacgggacagtcaggg
ctccctggcctccctggacagcaggggactcctggattaccaggattcccaggttctaaa
ggcgaaatgggcgtcatgggaaccccagggcaaccaggctcaccgggaccagctggcacc
ccagggttgcctggagagaaaggagaccatggccttccaggctcttcaggacccagggga
gaccctggcttcaaaggcgataagggggatgttgggcttcccggcatgccaggatctatg
gaacacgtggacatgggcagtatgaagggacagaaaggagaccaaggagagaaaggacaa
attggacccactggtgataaaggttcccgaggagatcctggaacgccaggagtgcctggg
aaggacgggcaggcggggcatcctggacaaccaggacctaaaggtgacccaggtcttagt
ggaacaccaggagcccctggcctccctggacccaaaggatctgttggaggaatgggcatg
ccaggtttacccggacagaaaggtgttcccggcatccccggccaacagggcgtccctggc
tcacctggagagaaaggagccaaaggagagaaaggacagtccggtgtacctggcattggg
attcccgggccgcccggcgacaagggagaccagggactcgcgggtttcccaggcagccct
ggcgagaagggagagaaaggcagcgccggaaccccagggatgccagggtccccaggccca
agggggtctccagggagcatcggctatccaggaagcccaggcctgcctggagagaaggga
gacaaaggcctcccgggattggatggtgttcctggtgtcaaaggagaagcaggtctccct
gggactcccggtcctacaggtccagctggccagaagggagagcctggcagtgatggcatc
cctgggtcagcaggagagaagggcgagccaggtcttcccggaagaggcttcccaggattc
ccagggaacaaaggagacaaaggttccaagggtgaagtgggcttccccggcttagctggg
agtccaggaattcctggagccaaaggggagcaaggattcatgggtcctccgggccctcaa
ggacaacccggtttacctggcactcctggtcatcccgtggaggggcccaaaggagaccga
ggacctcagggtcaacccggcctgccaggacatccgggacctatggggcctccagggttc
cccggactcaatgggccaaaaggtgacaagggaaatccaggttggccaggagctcctggg
gttccaggccccaagggagacccaggattccaaggcatgccgggcattggcggctctcca
gggatcacaggctcaaaaggagacatgggaccaccaggagttccaggattccaaggtcag
aaaggtcttcctggcctccagggagtgaaaggagaccagggggatcaaggcatacccggc
cctaaaggtctccaaggtcccccaggtcccccaggtccatatgatgtcatcaaaggagag
ccagggctccctggtccagagggtccccctggtctaaaaggactccagggaccaccaggt
ccaaaaggacagcaaggtgtgacaggctcggtgggctttcctggacccccaggtgttcct
gggtttgatggtgcccctggtcagaaaggagagaccggcccctttggaccacccggtccg
agagggtttcctggtccaccaggccccgatgggcagccaggatccatgggtcccccaggt
accccatctgtggaccacggcttccttgtgaccagacatagtcagacaacagatgatcca
ctgtgtcctccagggaccaaaattctctaccatgggtactctctgctctatgtgcaaggc
aacgaacgggctcatgggcaggacttgggcactgcaggcagctgtctgcgcaagttcagc
acgatgcccttcctcttctgcaacatcaacaatgtctgcaacttcgcctccagaaatgac
tactcctactggctgtccacgccagagccgatgcccatgtccatggctcccatctctggg
gacaacatccggcccttcattagcaggtgtgcagtgtgcgaagcacccgccatggtgatg
gcggtacacagtcaaaccatccagatcccgcagtgccccaacggttggtcctcactgtgg
atcggctattccttcgtcatgcacaccagcgctggtgctgaaggttccggccaagccctt
gcatcccccgggtcctgcctggaggagtttagaagcgccccgttcatcgagtgccatggc
cgaggaacatgcaattactacgcgaatgcttacagcttttggctcgccaccatagagaga
agcgagatgttcaagaagcccacgccgtccaccttgaaggcaggggagcttcgcacgcac
gtcagccgctgccaagtgtgcatgagaagaacataa
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