Arvicola amphibius (Eurasian water vole): 119820440
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Entry
119820440 CDS
T08327
Symbol
Arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp03082
ATP-dependent chromatin remodeling
aamp04714
Thermogenesis
aamp05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119820440 (Arid1b)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
119820440 (Arid1b)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
119820440 (Arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aamp03000
]
119820440 (Arid1b)
03021 Transcription machinery [BR:
aamp03021
]
119820440 (Arid1b)
03036 Chromosome and associated proteins [BR:
aamp03036
]
119820440 (Arid1b)
Transcription factors [BR:
aamp03000
]
Eukaryotic type
Helix-turn-helix
ARID
119820440 (Arid1b)
Transcription machinery [BR:
aamp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119820440 (Arid1b)
Chromosome and associated proteins [BR:
aamp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119820440 (Arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
119820440
NCBI-ProteinID:
XP_038194706
LinkDB
All DBs
Position
8:complement(10480269..10840274)
Genome browser
AA seq
2260 aa
AA seq
DB search
METGLLPNHKLKAVGEAPAAPPHQPHHHHHAHHHHHHHAHHLHHLHHHHHHHHHALQQQL
NQFQQPPQPQQQQPPQPPPQQHHPTANNSLGGAGGGAPQPGPDMEHPQHGGAKDSAAGSQ
ADPQGQPLLSKPGDEDDAPPKMGEPAGSRYEHPGLGAQQPPAPVALPGGGGGGPAAVSEF
NNYYGSAAPASGGPGGRAGPCFDQHGGQQSPGMGMMHSASAAAGAPSSMDPLQNSHEGYP
NSQYNHYPGYSRPGAGGGGGGGGGSGGGGGGGGAGGAGGAGGAAAAAAGAGAVAAAAAAA
AAAAAAGGGGGGYGGSSSGYGVLSSPRQQGGGMMMGPGGGGAASLSKAAAGAAAAAGGFQ
RFAGQNQHPSGATPTLNQLLTSPSPMMRSYGGSYPDYSSPSAPPPPPSQPQSQAAAAAAG
AAAGGQQAAAGMGLGKDLGAQYAAASPAWAAAQQRSHPAMSPGTPGPTMGRSQGSPMDPM
VMKRPQLYGMGTHPHSQPQQSSPYPGGSYGPPGTQRYPLSMQGRAPGALGGMQYPQQQMP
PQYGQQGVSGYCQQGQQPYYNQQPQPPHLPPQAQYLQPQSQQRYQPQQDMSQEGYGSRSQ
PPLAPGKSNHEDLNLIQQERPSSLPVEVLASEDAAFGLKDLSGSIDDLPTGTEATLSSAV
SASGSTSSQGDQSNPAQSPFSPHASPHLSSIPGGPSPSPVGSPVGSNQSRSGPISPASIP
GSQMPPQPPGSQSESSSHPALSQSPMPQERGFMAGTQRNPQMSQYGPQQAGPSMSPHPSP
GGQMHPGISNFQQSNSSGTYGPQMSQYGPQGNYSRTPTYSGVPSASYSGPGPGMSINANN
QMHGQGPTQPCGAMPLGRMPSAGMQNRPFPGNMSSVTPSSPGMSQQGGPGMGPPMPTVNR
KAQEAAAAVMQAAANSAQSRQGSFPGMNQGGLMASSSPYSQPMNNSSGLMNTQAQPYSMT
PTMANSSTASMGLADMMSPGESKLSTPLKADSKEEGVSQPESKSKDSYSSQGISQPPTPG
NLPVPSPMSPSSASISSFHGDESDSISSPGWPKTPSSPKSSSSSTTGEKITKVYELGNEP
ERKLWVDRYLTFMEERGSPVSSLPAVGKKPLDLFRLYVCVKEIGGLAQVNKNKKWRELAT
NLNVGTSSSAASSLKKQYIQYLFAFECKIERGEEPPPEVFSTGDAKKQPKLQPPSPANSG
SLQGPQTPQSTGSNSMAEVPGDLKPPTPASTPHGQMTPMQSGRSSTISVHDPFSDVGDAA
YPKRNSMTPNAPYQQGMGMPDMMGRMPYEPNKDPFSGMRKVPGSSEPFMTQGQMPNSSMQ
DVYNQSPSGAMSNLGMGQRQQFPYGASYDRRHEAYGQQYPGQGPPTGQPAYGGHQPGLYP
QQPNYKRHMDGMYGPPAKRHEGDMYNMQYGSQQQEVYNQYGSSYSGPDRRPIQGQYPYPY
NRERMQGPGQMQPHGIPPQMMGGPMQSASSEGPQQNVWAARNDMPYPYQNRQGPGGPAQA
PPYPGMNRTDDMMVPDQRINHESQWPSHVSQRQPYMSSSASMQPITRPPQSSYQTPPSLP
NHISRAPSPASFQRSLESRMSPSKSPFLPTMKMQKVMPTVPTSQVAGPPPQPPPIRREIT
FPPGSVEASQPVLKQRRKITSKDIVTPEAWRVMMSLKSGLLAESTWALDTVNILLYDDST
VATFNLSQLSGFLELLVEYFRKCLIDIFGILMEYEVGDPSHKALDHHAGKKDDSQSSGDD
SGKEEDAECPDEEEEDEDEEEDSGKTESEGTSSAAPAAPDATVDPKETPKQASKFDKLPI
KIVKKSNLFVVDRSDKLGRVQEFNSGLLHWQLGGGDTTEHIQTHFESKMEIPPRRRPPPP
LSSTGRKKEPEGKGDSEEQPEKSIIATIDDVLSARPGALPEDANPGPQTDSSKFPFGIQQ
AKSHRNIRLLEDEPRSRDETPLCTIAHWQDSLAKRCICVSNIVRSLSFVPGNDAEMSKHP
GLVLILGKLILLHHEHPERKRAPQTYEKEEDEDKGVACSKDEWWWDCLEVLRDNTLVTLA
NISGQLDLSAYTESICLPILDGLLHWMVCPSAEAQDPFPTVGPNSVLSPQRLVLETLCKL
SIQDNNVDLILATPPFSRQEKFYATLVRYVGDRKNPVCREMSMALLSNLAQGDALAARAI
AVQKGSIGNLISFLEDGVTMAQYQQSQHSLMHMQPPPLEPPSVDMMCRAAKALLAMARVD
ENRSEFLLHEGRLLDISISAVLNSLVASVICDVLFQIGQL
NT seq
6783 nt
NT seq
+upstream
nt +downstream
nt
atggagaccgggctgctccccaaccacaaactgaaagccgttggcgaggcccccgctgca
ccgccccatcagccgcaccaccaccaccatgcccaccaccaccatcaccaccatgcccac
cacctccaccacctccaccaccaccaccaccaccaccaccacgcactacagcagcagcta
aaccagttccagcagccgccgcagccacagcagcagcagccgccacagccgccgccgcag
cagcatcatcccactgccaacaacagcctgggcggcgcgggcggcggcgcgccccagccc
ggcccggacatggagcacccgcaacatggaggcgccaaggacagtgccgcgggtagtcag
gccgacccgcagggccagcctctgctgagcaagccgggcgacgaggacgacgcgccgccc
aagatgggggagccggcgggcagccgctatgagcacccgggcctgggcgcgcagcagcca
cccgcgccggtcgccctgcccgggggcggcggtggcggcccggcggccgtctcggagttt
aataattactatggcagcgctgcccctgctagcggcggccccggcggccgcgctgggcct
tgctttgatcaacatggcggacaacaaagccccgggatggggatgatgcactccgcctct
gccgccgccggggcccccagcagcatggaccccctgcagaactcccacgaagggtacccc
aacagccagtacaaccattatccgggctacagccggcccggcgcgggcggcggcggcgga
ggaggaggaggcagcggaggaggtggaggaggaggaggagcaggaggagcaggaggagct
ggaggagcagcggcagcggcagcaggagccggagctgtggcggcggcggccgcggcggcg
gcggcggcggcagcagcaggaggcggcggcggcggctatgggggctcgtcctcggggtac
ggggtgctgagctccccgcggcagcagggcggcggcatgatgatgggccccgggggcggc
ggggccgcgagcctcagcaaggcggccgccggcgcggcggcagcggcggggggcttccaa
cgcttcgccggccagaaccagcacccgtcgggggccacgccgaccctcaaccagctgctc
acctcgcccagccccatgatgcggagctacggcggcagctaccccgactacagcagcccc
agcgcgccgccgccgccgccgtcgcagccccagtctcaggcggcggcggcggcggcgggg
gcggcggcgggtggccagcaggcggccgcgggcatgggcttgggcaaggacctgggcgcc
cagtacgccgctgccagcccggcctgggcggccgcgcaacaaaggagtcacccggcgatg
agccccggcacccccggaccgaccatgggcagatcccagggcagtccaatggatccaatg
gtgatgaagaggcctcagttgtacgggatgggtactcacccccattcccagccacagcag
agcagtccatacccaggaggctcctatggtcccccaggaacacagcggtaccccctcagc
atgcagggccgggctccaggggccctgggaggcatgcagtacccacagcagcagatgccg
ccgcagtatggacagcaaggtgtgagtggttactgccagcaaggccagcagccatactac
aaccagcagccgcagcccccgcacctcccgccccaggcccagtacctgcagccccagtcc
cagcagaggtaccagccacagcaggacatgtctcaggaaggctatggaagtagatctcag
cctcctctggcccccggaaaatccaaccacgaagacttgaatttaatccaacaggaaaga
ccatcgagtttaccagttgaagtattggcctcggaggatgcagcctttggactcaaggac
ctgtctggctccatcgatgacctccccacaggaacggaagcaactctgagctcagcagtc
agtgcgtccggctctacaagcagccagggggatcagagcaacccggctcagtctcctttc
tccccacacgcatccccccatctctccagcatccctggggggccatcaccttctcctgtt
ggctctcctgtgggaagcaaccaatctcggtctggtccgatttcccctgcaagtattcca
ggcagccagatgcctccccaaccgccagggagccagtcagaatccagttcccatcctgcc
ttgagccagtcaccaatgccacaggaaagaggttttatggcaggcacacagagaaacccc
cagatgtctcagtatggacctcagcaggcaggaccatccatgtcaccccacccttctcct
gggggccagatgcatcctggaatcagtaactttcagcagagtaactcaagtggcacttac
ggtccacagatgagccagtatggaccccaaggcaactactccagaaccccaacatatagt
ggggtacccagtgcaagctacagcggcccagggcccggtatgagtatcaatgccaacaac
cagatgcatggacaagggccaacccagccatgtggtgctatgcccctgggacgaatgcct
tcagctgggatgcagaacagaccatttcctggaaacatgagcagcgtcacccccagttct
cctggcatgtctcagcagggagggccaggaatgggcccaccaatgcccactgtgaaccgt
aaggcccaggaagccgctgcagctgtgatgcaggctgctgcaaactcagcacaaagcagg
caaggcagttttcctggcatgaaccagggtggactcatggcctccagctctccctacagc
cagcccatgaacaacagctctggcctgatgaacacacaggcacagccctacagcatgacc
ccgacaatggcgaacagctccacagcttctatgggtcttgcagatatgatgtctccgggc
gagtcaaaactgtccacacctcttaaagcagacagtaaagaagaaggcgtgtcccagcct
gagagcaagtcaaaggatagctacagctctcagggcatctctcagcctccgaccccaggc
aacctgccagtcccttccccaatgtcccccagctctgccagcatctcctcctttcacgga
gacgagagtgacagcattagcagcccaggatggcccaagactccgtcaagccctaagtcc
agctcatcttccaccactggggagaagatcacaaaagtgtacgagctggggaacgagccg
gagaggaagctgtgggtcgaccgctacctgaccttcatggaagagagaggttctccagtg
tccagtcttcccgcagtgggcaagaagcccctggacctgtttcgactctatgtctgcgtc
aaagagattggcggtctggcgcaggttaataaaaacaagaagtggcgtgagctggcaacc
aacctaaatgttggcacttcaagcagtgcggctagttccctgaaaaagcagtatattcag
tacctgttcgcctttgagtgcaaaattgagcgtggggaggagcccccaccagaagtcttc
agcacaggggatgccaagaaacagcccaagctgcagccgccatctcctgctaactcagga
tccttacaaggcccacagaccccacagtcaactggcagcaactcgatggcagaagttccc
ggtgacctgaagccaccaaccccagcatctacccctcatggacagatgacccccatgcaa
agtggaaggagcagtacaatcagtgtgcacgacccattctcagacgtgggtgatgcggca
tacccgaaacggaactctatgactccaaatgctccataccagcagggcatgggcatgcca
gacatgatgggcaggatgccctacgagcccaacaaggaccccttcagtggaatgagaaaa
gtgcctggaagtagcgagcccttcatgacacaaggacagatgcccaacagcagcatgcag
gatgtgtacaaccagagtccctcaggcgccatgtccaacctgggcatggggcagcggcag
cagtttccctatggagccagttacgaccgaaggcatgaggcttacgggcagcagtatcca
ggccaaggtcctcccacaggacagccggcgtatggaggacaccagcctggcctgtaccca
cagcagccgaattacaaacgccatatggatggcatgtacgggcctccagccaagcgccat
gaaggggacatgtacaacatgcagtatggcagccagcagcaggaggtgtacaaccagtac
ggaagctcttactctggccctgacaggaggcccatccagggacagtatccctacccctac
aacagggagaggatgcagggcccaggccagatgcagccacatggaatcccacctcagatg
atgggtggccccatgcagtcagcctccagcgaggggccgcagcagaacgtgtgggcagca
cgcaacgatatgccttatccctaccagaataggcaaggtccaggtggccctgcgcaggcg
ccgccttacccaggcatgaaccgaacggatgatatgatggtaccagaccagaggatcaat
catgagagccagtggccttctcacgtcagccagcgccagccttacatgtcgtcatcggcc
tccatgcagcccatcacgcgcccgcctcagtcatcctaccagacgccaccttcgctgcca
aaccacatctccagggcgcccagccccgcctccttccagcgctccctggagagtcgcatg
tctccaagcaagtcccccttcctgcccaccatgaagatgcagaaggtcatgcccacagtc
cccacatcccaggtcgctgggccgccccctcagccaccgccaatcagaagggagattacc
ttccctcctggctctgtggaagcatcacagccagtcctgaaacaaaggcgaaagatcacc
tcaaaagacattgtcactcccgaggcgtggcgtgtgatgatgtccctcaagtcgggtctg
ttggccgagagcacctgggctttggacaccgtcaacattctcctctacgacgacagcact
gttgccaccttcaacctctcccagctgtctggcttcctggaacttttagtagagtacttc
cgaaaatgcctcattgacattttcggaattcttatggaatatgaagtgggcgaccccagt
cataaagcacttgatcaccacgcaggaaagaaagatgatagccagtcctcaggagacgat
tctgggaaagaagaagatgctgagtgtcctgacgaagaggaggaggatgaggatgaggag
gaagacagcggaaagacggagtcggaggggacgagcagcgctgcccctgctgctccagat
gccaccgtagaccccaaggagacgccaaagcaggccagtaaatttgacaagctgcccata
aagattgtcaaaaagagcaacctgtttgtggtggaccggtctgacaagctgggccgcgtg
caggagttcaacagtgggctcctgcactggcagctggggggcggcgacactaccgagcac
atccagactcactttgagagcaagatggagatccctcctcgcaggcgcccgcctccgcct
ctcagctccaccgggaggaagaaagagccagaaggcaaaggtgattccgaagagcagcca
gagaaaagcatcatagccaccatcgatgacgtcttgtctgcccggccaggggccctgcct
gaagacgccaacccaggaccccagaccgacagcagcaagtttccctttggaatccagcaa
gccaaaagccaccggaacatcaggctattggaggacgagcccaggagccgggatgagacg
cccctgtgtaccatcgcacactggcaggactccctggccaagcgctgcatctgtgtgtcc
aacatcgtgcggagcttgtctttcgtgcctggcaacgacgcagagatgtccaaacaccca
ggcttggtgctgatcctgggaaagctgattctgctgcatcacgagcacccagagagaaaa
agggcgccacaaacctacgagaaggaggaggatgaggacaagggggtggcctgcagcaaa
gatgagtggtggtgggactgccttgaggtcttgcgggataacacattggtcacgttggcc
aacatttctgggcagctagacttgtctgcgtacacggagagcatctgcttgccgatcctg
gacggtttgctgcactggatggtgtgcccgtccgcagaggcacaggacccctttcccacc
gtggggcctaactcagtcctgtcaccacagagacttgtgctagagacgctctgtaaactc
agtatccaggacaacaacgtggacctcatcttggccacacctccatttagccgtcaggag
aaattttatgctacattagttaggtacgttggggatcgcaaaaaccccgtctgtcgagaa
atgtccatggctcttttatcgaaccttgcccagggggacgcactggcagcaagggcaata
gctgtacagaaaggaagcatcggaaacttgataagcttcctggaggatggggtgacgatg
gcgcagtaccagcagagccagcacagcctcatgcacatgcagcccccacctctggaaccc
cctagcgtagacatgatgtgcagggcggccaaggctttgctggccatggccagagtggac
gaaaaccgttcagaattccttttgcacgagggtcggttgctggatatctcgatatcggct
gtcctgaactctctggtggcgtctgtcatctgtgatgtactgtttcagattgggcagtta
tga
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integrated database retrieval system
