Arvicola amphibius (Eurasian water vole): 119820894
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Entry
119820894 CDS
T08327
Symbol
Prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Pathway
aamp04120
Ubiquitin mediated proteolysis
aamp04137
Mitophagy - animal
aamp04141
Protein processing in endoplasmic reticulum
aamp05012
Parkinson disease
aamp05014
Amyotrophic lateral sclerosis
aamp05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
119820894 (Prkn)
04120 Ubiquitin mediated proteolysis
119820894 (Prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
119820894 (Prkn)
09160 Human Diseases
09164 Neurodegenerative disease
05012 Parkinson disease
119820894 (Prkn)
05014 Amyotrophic lateral sclerosis
119820894 (Prkn)
05022 Pathways of neurodegeneration - multiple diseases
119820894 (Prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aamp04131
]
119820894 (Prkn)
04121 Ubiquitin system [BR:
aamp04121
]
119820894 (Prkn)
03029 Mitochondrial biogenesis [BR:
aamp03029
]
119820894 (Prkn)
Enzymes [BR:
aamp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
119820894 (Prkn)
Membrane trafficking [BR:
aamp04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
119820894 (Prkn)
Aggrephagy
Other aggrephagy associated proteins
119820894 (Prkn)
Xenophagy
Other xenophagy associated proteins
119820894 (Prkn)
Ubiquitin system [BR:
aamp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
119820894 (Prkn)
Mitochondrial biogenesis [BR:
aamp03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
119820894 (Prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Crinkler
Motif
Other DBs
NCBI-GeneID:
119820894
NCBI-ProteinID:
XP_038195528
LinkDB
All DBs
Position
8:6627377..7775711
Genome browser
AA seq
464 aa
AA seq
DB search
MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDLTVQSCD
LEQQSIVHIVQRPWRKCLESNASGENKPHVSGGSVWEPRSLTRVDLSSHILPANSVGLAV
ILDTSSSRDSKVARGPAGKPTYNSFYVYCKGPCHRVQPGKLRVQCSTCRQATLTLAQGPS
CWEDVLIPNRMSGECQSPDCPGTRAEFFFKCGAHPTSDKDTSVALNLITTNSRSITCIAC
TDVRSPVLVFQCNHRHVICLDCFHLYCVTRLNDRQFVHDAELGYSLPCVAGCPNSLIKEL
HHFRILGEEQYNRYQQYGAEECVLQMGGVLCPRPGCGAGLLPEQGQRKVTCEGGNGLGCG
FVFCRDCKEAYHEGECDSLFEASGATAQAYRVDRRAAEQARWEEASKETIKKTTKPCPRC
NVPVEKNGGCMHMKCPQPQCRLEWCWTCSCEWNRACMGDHWFDV
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgttcgtcaggttcaactccagccatggcttcccagtggaggtggattccgac
accagcatcttccagctcaaggaagtggttgctaagcgacagggggttccagctgaccag
ctgcgtgtgatttttgctgggaaggagcttcggaatgacctgacggtgcagagctgtgac
ctggaacagcagagcatagttcacatagtgcagagaccatggagaaaatgtcttgagtca
aacgcttctggagagaacaagccccacgtctcagggggctctgtctgggagcccaggagc
ttgacgagggtggacctcagcagccatatcctgccagcgaactccgtggggctggcggtc
attctggacacaagcagcagcagagattccaaagtggccagaggtccagcaggtaaaccc
acatacaacagcttctatgtctactgcaaaggcccctgccacagggtccagcctggaaag
ctccgagttcagtgcagtacctgcagacaagccaccctgaccttggcccagggtccgtcc
tgctgggaagatgtcttaattccaaaccggatgagtggcgagtgccaatctccagactgt
cctggaaccagagcagaatttttctttaaatgtggagcacacccaacctctgacaaggat
acatccgtagccttgaacctgatcaccactaacagccgcagcatcacctgcatagcgtgc
acagatgtcaggagccccgtcctggtcttccaatgtaaccaccgccacgtgatctgcttg
gactgtttccacttgtactgtgtcacaagactcaatgaccggcagtttgtccatgatgct
gagcttggctactccctgccgtgtgtggctggctgtcccaactccctgattaaagagctc
catcacttcaggattcttggagaagagcagtacaacaggtaccagcagtatggcgcggag
gagtgtgtactgcagatggggggcgtgctgtgcccccgtcctggctgcggagctgggctg
ctgcctgaacagggccagaggaaagtcacctgtgaagggggcaacggcctgggctgcggg
ttcgtcttctgccgggactgtaaggaagcataccatgaaggtgaatgtgactcactgttt
gaagcctcgggggccaccgctcaggcctaccgagtggacagaagggctgctgagcaagct
cgctgggaggaggcctctaaagaaaccatcaagaaaaccactaagccttgtcctcgctgc
aatgtgccagtggaaaaaaatggaggctgcatgcacatgaagtgtccgcagccgcagtgc
agactggagtggtgctggacctgcagctgtgagtggaaccgagcctgcatgggtgaccac
tggttcgacgtgtag
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