Amedibacterium intestinale JCM 30884: Aargi30884_24150
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Entry
Aargi30884_24150 CDS
T06426
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aarg
Amedibacterium intestinale JCM 30884
Pathway
aarg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aarg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Aargi30884_24150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aarg03400
]
Aargi30884_24150
Enzymes [BR:
aarg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Aargi30884_24150
DNA repair and recombination proteins [BR:
aarg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Aargi30884_24150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BBK23512
UniProt:
A0A6N4TN70
LinkDB
All DBs
Position
2438146..2439075
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AA seq
309 aa
AA seq
DB search
MYEDVHVSPMLIGIEKEAFDDRNFIYELKLDGIRVLVYIENGHVDIRNKRGDKLLYKFPE
LEDMYKQIKQDCILDGELYCFGNGQIDFFELQKRSLLKDKFKIMMASKQHPASFTAFDIL
YVKEKSLLKTPLLKRKRILSKNVVENHQISISRYVEEQGKALFQLTTQKHLEGIVAKRKD
SLYSCGKRTKDWIKCKNMMDEDFVIVGYIRKDKNMVSLVLAQYDDKELLYKGHVTLGVSL
SYLQKHSNKTNVCPFPSVPNGNEDAVWISPYLVGCVKFMQHTKNGGMRQPVFKGFREDKT
PEECRVYKK
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaggatgtacatgtatcaccaatgcttataggaattgaaaaagaggcttttgat
gatcgtaattttatatatgaattaaagctggatggtatacgtgttcttgtttatattgag
aacggacatgtggatattcgaaataaaagaggagataaattgctgtataagtttcctgaa
ctagaggatatgtataagcagattaaacaagattgtattctggatggagagctgtattgt
tttggaaatgggcaaatagatttttttgaattacaaaaaagaagtttattaaaagataaa
tttaagatcatgatggcatcgaaacaacatccagcttcctttactgcctttgatatttta
tatgtaaaagagaaatccctgctgaaaacacctctattaaagaggaaaaggatattaagt
aaaaatgttgtggaaaatcatcaaataagtatatctcgctatgtggaagaacaagggaaa
gcgttgtttcaattgacgacacagaaacacttagagggtattgttgcgaaaagaaaagac
agtttgtattcttgtgggaaaaggacaaaagactggataaaatgcaagaacatgatggat
gaagattttgtaatcgttggatatatacgaaaagataagaatatggtttctttggtactt
gcacagtatgatgataaagaattgctgtataaaggacatgtaacactgggtgtttcttta
tcttatttgcaaaaacacagcaataaaacaaatgtatgcccttttcccagtgttccaaac
ggaaatgaagatgcagtttggatttctccttatttagtaggatgcgtaaagtttatgcag
catacgaaaaatggcggtatgagacagcctgtatttaaagggtttcgagaagataagacg
cctgaagaatgcagagtgtataaaaaataa
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