Alcanivorax borkumensis: ABO_0340
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Entry
ABO_0340 CDS
T00380
Symbol
pcnB
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
abo
Alcanivorax borkumensis
Pathway
abo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABO_0340 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abo03019
]
ABO_0340 (pcnB)
Enzymes [BR:
abo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
ABO_0340 (pcnB)
Messenger RNA biogenesis [BR:
abo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ABO_0340 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
CAL15788
UniProt:
Q0VSR0
LinkDB
All DBs
Position
complement(373440..374819)
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AA seq
459 aa
AA seq
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MPCKLLKHMTRWFTPSSADSAGPLEPRVIPRDQHPISRQQVSRAALNVLYGLHKGGFEAY
LVGGCLRDILCGREPKDFDVSTNATPEQVQRLFKRSRIIGRRFQIVHVRFGREVIEVSTF
RAKASDDNQDRNKHHAHEETGMVLRDNTWGSIEEDALRRDFTINALYYNIADFSLHDFVG
SMEDIDQETIRLIGDPEQRFREDPVRMLRAARFAAKLGFEIEKSTASRIPDMAELLLQVP
SARLFDEVLKLFLSGHARASYEQLQELGLFRFLFPETQQALEGDQGKTWEAMLLAAMDNT
DRRLLMDKPVTPAFIYAVLLWPVIQQRLTGYLSSGLPPAQALHKSATRALNLQIKHTAIP
RRFSTVMREMWELQLRLDKRAGRRADAMMEHPRFRAAYDFLLLREQCGEIEPGLGDWWTR
YQEEDESGRREMISELGNRGGGNNKRRRRRRRPKPAADN
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgccctgcaagcttctcaaacatatgacacgctggtttactccaagttccgcagattct
gccggcccgctggaaccccgcgtcattcctcgcgatcaacatcccatttcccgccagcaa
gtttcccgcgccgcccttaatgtgctctacgggttacacaagggaggatttgaggcttat
ctggtcgggggctgcctgcgcgacatcctctgcggtcgcgaacccaaggattttgacgtt
tccaccaatgccaccccggaacaggtacagcgccttttcaagcgcagccgcattattggt
cgacgctttcaaatcgttcatgttcgctttggtcgcgaagtcattgaagtctccacattt
cgagccaaggccagtgacgacaaccaggaccgaaataagcaccatgctcatgaagaaacc
ggcatggtactgcgcgataacacctggggcagcatagaagaagacgccctgcgtcgcgat
ttcaccatcaacgccctgtactacaatattgctgatttttccctgcatgattttgtcggc
agcatggaagatattgaccaggaaacaatccgcctgattggtgacccggagcaacgcttt
cgcgaagaccctgtacgtatgctgcgcgcggcccgtttcgccgccaaactgggcttcgaa
atagaaaaaagtaccgccagtcgcatcccagatatggctgaattattgctgcaggtacct
tccgcacgtctatttgacgaggtactcaaactcttcctcagcggccacgcccgagcatcg
tatgaacagctacaagaactgggcctgttccgcttcctatttccggaaacccagcaagca
ctggaaggagaccaaggcaagacgtgggaggccatgctactggccgctatggacaacacc
gaccgccgtctgctgatggataagcccgttactcccgcttttatctatgcagtattattg
tggccggtgatccagcagcgtcttaccggttacttgtctagtggcctacccccggcacag
gcactacacaagtccgccaccagggccctcaacctgcaaatcaagcacaccgctatcccc
cgtcgtttctccaccgtgatgcgagaaatgtgggagctacagctgcggctggacaaacgt
gccggccggcgtgctgatgcgatgatggagcaccctcgtttccgggccgcctacgatttc
ctattattgcgcgagcaatgcggtgaaattgaaccaggattaggcgactggtggacccgc
taccaggaagaagatgagagcggtcgccgggaaatgatcagcgaactaggcaaccgcgga
ggcggcaacaacaaacgtcgtcgccgccggcgccggccaaagcctgctgcagataattga
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