Actinacidiphila bryophytorum: NYE86_18065
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Entry
NYE86_18065 CDS
T08584
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
abry
Actinacidiphila bryophytorum
Pathway
abry03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
abry00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NYE86_18065 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abry03400
]
NYE86_18065 (ligD)
Enzymes [BR:
abry01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NYE86_18065 (ligD)
DNA repair and recombination proteins [BR:
abry03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NYE86_18065 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UWE10437
LinkDB
All DBs
Position
4198502..4199419
Genome browser
AA seq
305 aa
AA seq
DB search
MSGTPYETVRAGRRTVRIDRPGKVLFPADGLTKADVAAYYKTVAPRMLPQLRGRPLMLER
HPDGIDGPGFMQKDTPDHVPDWVRRAELPKEGGTVTYTICDDTATLVYLAGQACVTLHRF
LSRADRADHPDRLVFDLDPPDTAFEPVRDAARQVHGLLDELELPSTVMTTGSRGLHVLVA
LDGKAAVDDVRAFARDAAGLLAARHPRTLTAEPRKAARHGRLYLDVQRNAYAQTSVAPYA
LRSLAGAPVAAPLTWDDVDDPEVTARRWTLADADALAAANPWRDAPRPRSLGPARRRLDA
LLRER
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtacgccgtacgagacggtacgggccggccgccggacggtacggatcgaccgc
cccggcaaggtgctcttccccgcggacggcctgacgaaggccgacgtggcggcgtactac
aagaccgtggccccgcggatgctgccgcagctgcgcggccggccgctcatgctggagcgg
caccccgacggcatcgacgggcccggcttcatgcagaaggacaccccggaccacgtaccg
gactgggtgcgcagagccgaactgcccaaggagggcggcacggtcacctacacgatctgc
gacgacaccgcgacgctggtctacctcgccgggcaggcgtgcgtgacgctgcaccgcttc
ctgtcccgggccgaccgggcggaccacccggaccgcctggtcttcgacctcgacccgccg
gacaccgctttcgagccggtgcgggacgcggcacggcaggtgcacgggctgctggacgag
ctggagctgccctcgacggtgatgacgaccggctcgcgcggcctgcacgtcctggtcgcg
ctggacggcaaggccgcggtggacgacgtccgggccttcgcacgtgacgcggcgggcctg
ctggccgcccgccacccgcgcaccctcaccgccgagccgcgcaaggccgcccgccacggc
cgcctctacctcgatgtgcagcgcaacgcctacgcccagacgtcggtggccccttacgcg
ctccgctccctggcaggcgcacccgtagcggccccgctgacctgggacgacgtggacgac
cccgaggtgaccgcccgccgctggacgctcgccgacgccgacgcgctggccgcggcgaac
ccctggcgggacgcaccgcgcccccgctcgctcggccctgcgcgccgccgcctcgacgcc
ctgctgcgggagcgctga
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