Amedibacterium intestinale 9CBEGH2: A9CBEGH2_21710
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Entry
A9CBEGH2_21710 CDS
T06427
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
absi
Amedibacterium intestinale 9CBEGH2
Pathway
absi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
absi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A9CBEGH2_21710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
absi03400
]
A9CBEGH2_21710
Enzymes [BR:
absi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A9CBEGH2_21710
DNA repair and recombination proteins [BR:
absi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A9CBEGH2_21710
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BBK63231
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Position
2227880..2228809
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AA seq
309 aa
AA seq
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MYEDVHVSPMLIGIEKEAFDDRNFIYELKLDGIRVLAYIENGHVDIRNKRGDKLLYKFPE
LEDMYKQVKQNCILDGELYCFGNGQIDFFEIQKRSLLTDKFKIMMASKQHPASFTAFDIL
YVKEKSLLKTPLLKRKRILSKNVVENHQISISRYVEEQGKALFQLTTQKHLEGIVAKRKD
SLYSCGKRTKDWIKCKNMMDEDFVIVGYIRKDKNMVSLVLAQYDDKELLYKGYVTLGVSL
SYLQKHSNKTNTCPFPSVPNGNEDAVWIFPYLVGCVKFMQHTKNGGMRQPVFKGFREDKT
PEECRVDKK
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaggatgtacatgtatcaccaatgcttataggaattgaaaaagaggcttttgat
gatcgtaattttatatatgaattaaagctggatggtatacgtgttcttgcttatattgag
aatggacatgtagatattcgaaataaaagaggagataaattgctgtataagtttccggaa
ctagaggatatgtataagcaggttaaacaaaattgtattctggatggagaattgtattgt
tttggaaatgggcaaatagattttttcgaaatacaaaaaagaagtttgttaactgataaa
tttaagattatgatggcatcgaaacaacatccagcttcctttactgcctttgatatttta
tatgtaaaagagaaatccctgctgaaaacacctctattaaagaggaaaaggatattaagt
aaaaatgttgtggaaaatcatcaaataagtatatctcgttatgtggaagaacaagggaaa
gcgttgtttcaattgacaacacaaaaacacttagagggtatcgttgcgaaaagaaaagac
agtttgtattcttgcgggaaaaggacaaaagactggataaaatgcaagaacatgatggat
gaagattttgtaatcgttggatatatacgaaaagataagaatatggtttctttggtactt
gcacagtatgatgataaagaattgctgtataaagggtatgtgacactgggtgtttcttta
tcttatttgcaaaaacacagcaataaaacaaatacctgtccttttcccagtgttccaaac
gggaatgaagatgcagtttggatttttccttatttagtagggtgtgtaaaatttatgcag
catacgaaaaatggcggtatgagacagcctgtatttaaagggtttcgagaagataagacg
cctgaagaatgcagagtggataaaaaataa
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