Aliarcobacter butzleri ED-1: ABED_1018
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Entry
ABED_1018 CDS
T01823
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
abt
Aliarcobacter butzleri ED-1
Pathway
abt03030
DNA replication
abt03410
Base excision repair
abt03420
Nucleotide excision repair
abt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABED_1018
03410 Base excision repair
ABED_1018
03420 Nucleotide excision repair
ABED_1018
03430 Mismatch repair
ABED_1018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abt03032
]
ABED_1018
03400 DNA repair and recombination proteins [BR:
abt03400
]
ABED_1018
Enzymes [BR:
abt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABED_1018
DNA replication proteins [BR:
abt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABED_1018
DNA repair and recombination proteins [BR:
abt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABED_1018
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABED_1018
MMR (mismatch excision repair)
DNA ligase
ABED_1018
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABED_1018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
BRCT_2
HHH_5
DNA_ligase_ZBD
DUF5748
Motif
Other DBs
NCBI-ProteinID:
BAK70735
LinkDB
All DBs
Position
complement(1045023..1046981)
Genome browser
AA seq
652 aa
AA seq
DB search
MTKEEYDLNIEKLISWANAYYVFDNPIATDEEYDKLARLCLAYEQENPKLSHPNSPNKRV
GGIVLDGFIKASHLSRMWSQEDIFNTQELEDWIKRASKVNTNLEFFCQPKFDGASLNLIY
ENGILKQAITRGDGTVGEDVTNNAKTIFSIPLEIKEKSLIEIRGEVVIKKADFEKINIER
AKNGEQLFANPRNAAAGSLRQLDSNITAKRKLFFNVWGIGQNSLEHKKYSQIMEYIYSLG
FERPQMQTLASNIEEIESLYHKFISIRNDFEMMLDGMVIKIDDIETQEELGYTVKFPRWS
CAYKFPAVEKTTKLKAITLQVGRTGIITPVAEVEPTLIDGSTVSRATLHNFDEIERLDLK
INDEVIIIKSGDIIPKITKVFLERRKGDEITISRPTSCPTCNSEVLDEGTMIKCQNLDCP
SRVVNSIIYFASKNCMNIDGLGNKIVEQLFNEKKIYDILDIYSLKYEDLQDLEGFKEKKI
NNLLNAIENTKGSELHRVINALGIEHIGEVASKQICLEFGLDVINKDYDSLIALDGFGEQ
MANSFIEFMRVNKNLVEKLISIINPRVEIKKEVSENPFKNKTVVITGTMSKSRGEIKSML
EDLGAKVSSSVSKKTDYVIFGEDAGSKYDKAIELGVKLLTEEEMNSLFKLEK
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagaagagtacgatttaaatatagaaaaattaatatcttgggctaatgcttat
tatgtttttgataatccaatagcaactgatgaagagtatgacaaactagcaagactttgt
ttagcttacgagcaagaaaatccaaaactttctcatccaaattcaccaaataaaagagtt
ggtggaattgttttagatggatttataaaagcttctcatcttagtcgtatgtggagtcaa
gaagatatttttaatacgcaagaacttgaagattggataaaaagagcttcaaaagtaaat
acaaatctagagtttttttgtcaacctaagtttgatggagcttctttaaatcttatttat
gaaaatggtattttaaaacaagctattacaagaggtgatggaactgttggtgaagatgta
acaaacaatgcaaaaacaattttttctattccacttgaaataaaagaaaaatctttaata
gaaattcgtggtgaagttgtaataaaaaaagcagattttgaaaaaatcaatattgaaaga
gcaaaaaatggtgaacaactttttgcaaatcctagaaatgcagcagctggaagtttaaga
caacttgattcaaatataactgcaaaaagaaaactattttttaatgtttggggaattggt
caaaattcactagaacataaaaaatattcgcaaattatggaatatatatactctttagga
tttgaaagacctcaaatgcaaacattagcttcaaatatagaagaaatagaaagtttatac
cacaaatttatctctataagaaatgactttgaaatgatgcttgatggaatggttataaaa
atagatgatatagaaacacaagaagaacttggttacacagtaaaatttccaagatggtca
tgtgcttataaattcccagcagttgaaaaaacaacaaaactaaaagcaataactttacaa
gttggtcgaacaggaattataactccagtagcagaagtagaaccaacactgattgatggc
tcaactgttagtcgtgcaactttacataactttgatgaaatcgaaagactagatttaaaa
ataaatgatgaagtaattatcataaaaagtggagatatcatcccaaaaatcacaaaagtt
tttcttgagcgaagaaaaggagatgaaataactatatctcgccctacttcatgtcctaca
tgtaatagtgaagttttagatgaaggaacaatgataaaatgtcaaaatcttgattgtcca
tcaagagttgtgaactcaataatctattttgctagtaaaaattgtatgaatatagatggt
cttggaaataaaatagttgaacaactatttaatgaaaaaaagatttatgatattttagat
atttattctttaaaatatgaagatttgcaagatttggaaggttttaaagagaaaaaaata
aacaatcttttaaatgcgatagaaaatacaaaaggtagtgaacttcatagagttataaat
gctttaggaatagaacatataggcgaagttgcttcaaaacaaatatgtttagaatttggc
ttagatgtgataaataaagattatgattcactaatagcacttgatggttttggtgaacaa
atggcaaattcatttattgaatttatgagagtaaataagaatttagttgaaaaacttatc
tctataataaatccaagagttgaaataaaaaaagaagtaagtgaaaatccatttaaaaat
aaaactgttgtaataacaggaactatgagtaaaagtcgtggtgaaataaaatctatgctc
gaagatttaggggctaaagtttcttctagtgtttctaaaaaaactgattatgtaattttt
ggagaagatgctggaagtaaatatgataaagctattgaattaggagtaaaactcttaact
gaagaagagatgaattcactatttaagttagaaaaataa
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