Acidobacterium capsulatum: ACP_3506
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Entry
ACP_3506 CDS
T00868
Name
(GenBank) putative DNA ligase, ATP-dependent
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
aca
Acidobacterium capsulatum
Pathway
aca03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ACP_3506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aca03400
]
ACP_3506
Enzymes [BR:
aca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ACP_3506
DNA repair and recombination proteins [BR:
aca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ACP_3506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DUF4604
Motif
Other DBs
NCBI-ProteinID:
ACO34127
UniProt:
C1F736
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All DBs
Position
4075693..4078284
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AA seq
863 aa
AA seq
DB search
MRDFGVTPEPKGAAGKRLNAGALSFVVQKHAASHLHYDFRLEWQGVLKSWAVAKGPSYYP
GDKRLAVEVEDHPLAYGGFEGIIPQGQYGGGTVMLWDRGTWEPLGDAARQLRDGNLKFRL
HGEKLKGCWALVRMKGKFAGRSKPSWLLIKEHDESERGDDAPAIVDEAPLSVVSGRDMQQ
IAEAQDAVWNAKGAQAQSSAAAHRANAPKQSMPAALLPREIAATLKRLPSEALPRFVPPQ
LATLVSEPGAGENRVYEIKLDGYRIEARVDKKADPPVQLLTRTGLDWTSRMRPLADALLR
LPVQTALLDGELVVLEEKGTTSFAKLQAVLKDDSRHSLTYFAFDLLHLDGHNLRGEPLLI
RKKILSALLTDLPASSAVRFSEHVKGNGEEIFQKACKLGAEGVISKLAQGFYHSGRSRDW
WKLKCYLEQELVIGGYTLPSNGTYGVGALLLGYYDAGKLIYAGRTGTGFTRATHRRMREQ
LEAIRRGTAPFAKVEQDARRGAIWVQPQLVAQVSFASWTTDGLVRQAAFKGLREDKPAKT
VRREGGQMPESEGKAAKKPRANSTTVRSELRLTHRDKVLDKDSGLTKEALADYYARIAPF
MLPHIQGRAVSIVRCPAGSDLSCFFQKHNNHTLPGEIESIEIASRKTGKVEPFLTISSAN
DLLVLAQASVLEIHAWGSTRDSLEKPDRLTIDLDPDDAIDWKTLAGAAVEVRKRLARAGV
KSFLKSTGGKGLHVVAPIEPEHEWPEVKEFAHRMVLEMEKENPDLYLTRMTKAARKGKIY
LDYLRNERGATAIAPFSPRARPGAPVALPLRWSELKSAERPIFRVTEFDGWRKRLKADPW
RGFLQLHQSLRLPEAARVSPGGR
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atgagagattttggcgtgacgcccgagccaaagggcgcggcggggaagcgtttgaacgcg
ggcgcgttgagctttgtggtgcaaaagcatgcggccagtcatctgcattacgacttccgc
ctggagtggcagggagtgctcaagagctgggcggttgcgaaggggccaagttattatccc
ggcgacaagcggctcgccgtcgaggtcgaagaccatccgttagcctatggtggattcgag
ggcatcattcctcagggccagtacggcggcggcaccgtgatgctgtgggatcgcggcacc
tgggagccactgggtgatgcggcccgccagttgcgcgatggcaatctgaagtttcgattg
catggcgagaagctgaaaggctgctgggcgctggtgcgcatgaaagggaagtttgcgggg
cgatcgaagccgtcatggttgctgatcaaggagcacgacgaatccgaacgcggcgacgat
gcgccggccattgtggacgaagctccgctcagcgtagtgagtggccgggacatgcagcag
atcgccgaggctcaggatgccgtgtggaatgcgaagggcgcgcaggcgcaaagctccgcc
gctgcgcatcgtgccaatgccccgaagcaatccatgcccgccgcactccttccgcgcgaa
atagcggctactctcaagcgcttgcccagcgaggcgttgccgcggtttgtgcctccacaa
cttgcgacgctcgtgagcgagccgggggctggtgagaatcgcgtctacgaaatcaagctc
gatggctatcgcatcgaggcgcgcgtggacaagaaggccgatccgccggtgcagcttctc
acgcgcacgggccttgactggacgagccggatgcggccgttggccgatgctctgctgcgg
ctgccggtgcagaccgccttgctcgacggcgaactggtggtgctcgaagagaagggaacg
accagcttcgccaaattacaggcagtactgaaggatgactcccggcattcactcacatac
tttgcctttgacctgctgcatctggatgggcataatctgcgcggcgaaccattgctcatt
cgtaagaagatactcagcgcactgttgactgatttgcccgcaagcagcgcggtgcgcttc
agcgagcacgtgaaaggcaatggcgaggagatatttcaaaaggcctgcaaactcggcgcg
gaaggggtcatttcaaagctcgcgcagggcttttaccactccggccggagccgcgactgg
tggaagctcaagtgctatctcgaacaggaactggtcatcggcggatacacgctcccttcc
aacggcacctatggggtgggcgcattgctgctgggctattacgacgccggcaagctgatc
tacgcgggccgcacgggaacaggtttcacgcgcgccacgcatcgccgcatgcgagagcag
ttggaggccattcgccggggaactgcgccatttgcaaaggtggagcaggatgcgcggcgc
ggggccatctgggtgcagccgcagctcgtggcccaggtttcattcgcaagctggacgacc
gatggtctcgtccggcaggctgccttcaaggggttgcgtgaagacaagccggcaaagact
gtgcggcgcgaagggggacagatgccagaatcggaaggaaaggcggcgaagaaacctcgc
gcgaacagcaccacggtgcggtcagagcttcggctcacccatcgcgacaaagtgctcgac
aaggattcgggcctgaccaaagaggcgctcgcggactattacgccaggatcgcgcccttc
atgctgccgcacattcaagggcgtgcggtgtcgattgtgcgctgtcctgcgggcagtgac
ctgagttgcttctttcagaagcacaacaaccacacgctgcccggcgagatcgaaagcatt
gagattgcgagccgcaaaaccggcaaggttgagcccttcctcaccatctcaagcgcaaac
gatttgctggtactcgcgcaagccagcgtgcttgagattcatgcctggggttcgacgcgc
gactctctggaaaagccggaccgtctgacgatcgaccttgaccctgacgatgccatcgac
tggaagacgctggccggcgcggctgtggaggtgcgcaagcggctcgcacgcgcgggggtg
aaatcattcctcaagagcaccggcggcaagggccttcatgtcgtggcccccatcgagccc
gaacatgagtggcccgaggtcaaagagtttgcccatcgcatggtgctggagatggagaag
gaaaatcctgacctctatctcacgcgaatgaccaaggccgcccgcaaaggcaaaatctac
ctggattatctccgcaacgaacggggcgcgacggccatcgcgccgttctctccgcgagcg
cgcccgggagcgcccgtagcgctgccgctgcgctggtctgagctcaagtcggcggagcgg
cccatctttcgcgtgacggaatttgacggctggcgtaagaggctcaaggctgatccatgg
cgcggctttctgcagctgcatcagagtttgcgtctgcctgaggccgcccgggtgagtcca
ggaggaagatag
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integrated database retrieval system
