Acanthamoeba castellanii: ACA1_142620
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Entry
ACA1_142620 CDS
T02667
Name
(RefSeq) ATPdependent RNA helicase dbp2, putative
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
acan
Acanthamoeba castellanii
Pathway
acan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
acan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
ACA1_142620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
acan03041
]
ACA1_142620
03009 Ribosome biogenesis [BR:
acan03009
]
ACA1_142620
Enzymes [BR:
acan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACA1_142620
Spliceosome [BR:
acan03041
]
Complex A
U1 snRNP components
U1 related factors
ACA1_142620
Complex B
ACA1_142620
Ribosome biogenesis [BR:
acan03009
]
Eukaryotic type
Pre-60S particles
Helicases
ACA1_142620
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
14923503
NCBI-ProteinID:
XP_004349647
UniProt:
L8HAM3
LinkDB
All DBs
Position
Unknown
AA seq
706 aa
AA seq
DB search
MSSSRDTDRHSDYDYSRSSDRKGYGSSSSSSRSKDRSRSRSRDRSSRSSRDRYRSRSRSP
RDDRYRARSRSPPRDSYRSSSYSGSSSSYSSGGGYGDRYGSGAGGGYGGGSSSYGSYGGG
GGGGYGSRGGSGMGGDRMGALGMNLQRPNWASLHTQLTKFEKNFYVEAPTVASMTEAEVE
EYRKQQHITVLQGRNVPKPIRTFEEAQFPDYIMQTVRSLKFERPTAIQAQGWPCALSGRD
MVGLAETGSGKTLAFTLPAIVHINAQPFLQPGDGPIVLILAPTRELAVQIQEVANTFGLT
SKIKNTCVYGGVPKGPQIRDLSRGVEIVIATPGRLIDMLETGKTNLRRVTYLVLDEADRM
LDMGFEPQIRKIMEQIRPDRQTLMWSATWPKEVKALASEFLSQDMIQINIGSMELAANHR
VTQIVDIVQEYEKRPKLMKLLETIMDGGRILIFTQTKKGADQLQRALRGEGWPALAIHGD
KTQQERDATLAEFRSGRSPIMVATDVAARGLDVKDVRYVINYDFASTAEDYVHRIGRTGR
AGATGTAYSFFTSGDFKLAKRLIKVLSEAGQEVPPQLHQFAVMSKASGGPKSSFRGRGYG
GGGGSSYMPSSYSSSGSSYSGSSSYSSGGSASHYGPSSSSSRPSTSGAAPSASAASSSLP
QAAVPGYGMYPAYAAPASGYGAYPGVGVVNPYAYAAAPGAPAARRY
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcagcagagacaccgatcgccactctgactacgattactctcgcagcagcgac
aggaagggctacgggtcctcctcgagcagctcgagatcgaaagacagaagcaggagtcgt
tctagggatcgaagcagcaggtcgtccagagatcgctaccggtctcgttcacgatcgccc
cgagatgaccgataccgcgctcgttcgaggtcgccacctcgcgacagctatcggagcagt
tcgtatagcggcagcagcagctcgtacagcagcggcggcggctacggcgaccgctacgga
tcaggagccgggggaggctatggaggcggaagttcctcctacggtagttacggcggcggc
ggcggcggcggctacggaagtcgcggcggtagcggcatgggaggcgatcggatgggagcg
ctagggatgaacttgcagcggcccaactgggcgtcactccacacgcagctgaccaagttc
gagaagaacttttacgtggaggctcccaccgtggccagcatgaccgaggccgaggtggag
gagtaccgcaagcagcagcacatcacggtcctgcaggggcgcaacgtgcccaagcccatc
cgcacgttcgaggaggcccagttccccgactacatcatgcagacggtgcgttccctcaag
ttcgagcggccgacggcgatccaagcgcagggatggccctgcgcgctgagcgggagggac
atggtgggcttggccgagaccggctccggcaagacgctcgccttcacgctgccggccatc
gttcacatcaacgcgcagcccttcctccaaccgggcgacggccccatcgtgctcattctg
gcccctacccgcgagctggccgtccagatccaggaggtggccaacacgttcggcctcacc
tccaagatcaagaacacctgcgtctacggcggcgtgcccaagggtcctcagatccgagac
ctctctcgcggcgtggagatcgtcatcgcgacgcccggtcggctcatcgacatgctcgag
acaggcaagaccaatctgcgccgcgtcacctacctggtgctcgacgaggctgaccgcatg
ttggacatgggcttcgagccgcagatccggaagatcatggagcagatccggcccgaccgc
cagactctcatgtggagcgccacctggccgaaggaggtcaaggccttggcgtccgagttc
ctctcgcaggacatgatccagatcaacatcggctccatggaactcgctgccaaccaccgc
gtcacgcagatcgtcgacatcgtgcaggagtacgagaagcggcccaagctcatgaagctg
ctcgagaccatcatggatggcggcaggatcctcatcttcacgcagaccaagaagggagcc
gaccagcttcagcgagctctccgcggcgagggctggcctgccctggccatccacggcgac
aagacccagcaggagcgcgacgcgacccttgccgagttccggagcggacgatcgcccatc
atggtggccaccgacgtggccgcgcgaggtctcgacgtcaaggacgtgcgctacgtcatc
aactacgactttgcctcgaccgctgaggactacgtccaccgcatcggccgcacgggccgc
gccggcgccacgggcaccgcctacagcttcttcacctcgggcgacttcaagctggccaag
cgcctcatcaaggtcctctccgaggccggccaggaggtgcctccgcaactccaccagttc
gctgtcatgtccaaggcctccggcggccccaagtcttccttccgcggccgaggctacggc
ggcggcggtggctcctcctacatgccctcgtcgtactcctcttccgggtcgtcgtactct
ggctcttcgtcctactcatcgggcggaagtgcttcccactacggaccatcgtcgtcttcg
tctcgcccgtcgacttccggcgcagctccctcggcctcggcggcctcttcctccctgccg
caagctgccgtacccgggtacggtatgtaccccgcttacgccgctcccgcctcgggctac
ggagcctaccctggcgttggcgtcgtcaacccctacgcctacgccgccgcccccggtgcc
cccgccgctcgacgctactag
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