Acidothermus cellulolyticus: Acel_1670
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Entry
Acel_1670 CDS
T00426
Name
(GenBank) DNA primase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ace
Acidothermus cellulolyticus
Brite
KEGG Orthology (KO) [BR:
ace00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Acel_1670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ace03400
]
Acel_1670
Enzymes [BR:
ace01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Acel_1670
DNA repair and recombination proteins [BR:
ace03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Acel_1670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
MerR_2
Motif
Other DBs
NCBI-ProteinID:
ABK53442
UniProt:
A0LVI2
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All DBs
Position
1878389..1879972
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AA seq
527 aa
AA seq
DB search
MADRRPGDLREYRRRRNFCRTPEPAGRADPRHITRNSAEPRFVVQRHRATRLHYDLRLEI
NGVLVSWAVPKGPTLDPTVRRAAIHVEDHPLEYLDFEGAIPHGEYGGGDVIVWDTGTWRP
HGTDDPAQAVVDGELHADFFGRKLRGRFVFVRRGTDEKSWLVLHKDDEHAVRGWNPEDYP
RSVLSGATNDDVARHPRRLWRGGRAHPVAQHNDTEASADEIAALDALDDEGTWEVFGRRL
KVTHLNKVIYPGRGRTHALTKRDLLRYAARIAPVVMPYLAGRPFTMHRFPDGIDAPGFWH
KQLPSHAPDWLPRWQNPSAKRGEAATYLVVDEPAALIWAVNFGAIEWHAWTSRTDRPDLP
TWALVDIDPGSRTTWRELVELALLHRDALDHLGVQGKPKLTGQRGIQIWIPIRRGPTFDD
TRAWVEHLSKVVGSLMPDAVSWEWEKKRRAGRARLDFTQNAANKTLVAPYSPRPLPRAPV
SAPVEWDELPHLRPDRFTVRTILDRLAERGDPFHALLTVNQQLPPLG
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atggccgacagacgaccgggagacctgcgcgaataccggcgcagacggaatttctgccgc
acccccgaaccggcaggacgcgcggacccccggcacattacccgcaattcagcagaaccg
cggtttgtggtacagcgacatcgcgcaacgcggctgcattatgaccttcgactggaaatc
aacggggtcctggtgagctgggccgtgccgaaggggccgaccctggatcccacggtgcgg
cgagcggcgatccacgtcgaggatcatccgctggaatatctggactttgaaggtgcgatt
ccccacggggagtacggcggcggcgacgtcattgtgtgggacaccggcacgtggcgtcca
cacggcaccgacgatccggcacaagcggtcgtggacggcgaactccatgccgatttcttc
ggccgcaaactccgtgggcggttcgtcttcgtccgccgcggcaccgatgaaaaatcctgg
cttgtgctgcacaaggacgacgagcacgccgtccggggttggaatccggaggattacccg
cgctccgtcctctccggagccacaaacgacgacgtcgcccgacatccgcgccgactgtgg
agaggaggccgtgcgcatccggtggctcagcacaacgacaccgaagcgagtgccgacgaa
atcgcggcactcgacgcgctcgacgatgagggcacgtgggaggtcttcggcaggcgcctc
aaggtgacccatctcaacaaggtgatctacccgggacgcggacgcacccacgcactcacc
aaacgcgatctcctccgctacgcggcgcgcattgcacccgtcgtcatgccgtacctagcc
ggccgcccgttcaccatgcatcgcttccccgacggcatcgacgcacccggtttctggcac
aaacaattgccgtcacacgctcctgactggttgccgcggtggcaaaatccgagcgctaaa
cgcggagaagcagcgacgtaccttgttgtggacgaaccagcggccttgatctgggcggtc
aattttggtgcgatcgagtggcacgcctggacctcacgcacggaccggccagacctgccg
acctgggcattggtggacatcgacccggggagccgcacgacgtggcgggagctcgtcgag
ctggccctccttcaccgcgacgctctcgaccaccttggtgtgcagggaaaacctaagctc
accggtcaacgcggcatccagatatggattccgatccggcgcggcccgacatttgacgac
acaagagcctgggtcgagcacttgtccaaggtggtcggctccctcatgcccgatgccgtg
agttgggagtgggagaagaagcggcgcgccggtcgggcccgcttggatttcacacagaac
gcggcgaacaagacgcttgtcgctccatacagcccgcgtccattgccgcgggcccccgtc
tcggctccggtcgagtgggacgaactcccgcacctgcgcccggatcgctttaccgtgcgc
actattctcgaccgtcttgcagagcgtggagacccattccacgcgctgctcaccgttaac
caacagctcccgccgctcggctaa
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