Acidovorax sp. NA2: CBP33_11455
Entry
CBP33_11455 CDS
T04914
Definition
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
acid
Acidovorax sp. NA2
Pathway
acid03030
DNA replication
acid03410
Base excision repair
acid03420
Nucleotide excision repair
acid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acid00001
]
Genetic Information Processing
Replication and repair
03030 DNA replication
CBP33_11455
03410 Base excision repair
CBP33_11455
03420 Nucleotide excision repair
CBP33_11455
03430 Mismatch repair
CBP33_11455
Enzymes [BR:
acid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CBP33_11455
6.5.1.6 DNA ligase (ATP or NAD+)
CBP33_11455
6.5.1.7 DNA ligase (ATP, ADP or GTP)
CBP33_11455
DNA replication proteins [BR:
acid03032
]
Eukaryotic Type
DNA Replication Elongation Factors
Other elongation factors
CBP33_11455
Prokaryotic Type
Elongation factors (archaeal)
Other elongation factors
CBP33_11455
DNA repair and recombination proteins [BR:
acid03400
]
Eukaryotic Type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
CBP33_11455
NER (nucleotide excision repair)
Other NER factors
CBP33_11455
MMR (mismatch exicision repair)
Other MMR factors
CBP33_11455
SSDB
Motif
Pfam:
DNA_ligase_OB_2
DNA_ligase_A_M
SnoaL
Other DBs
NCBI-ProteinID:
ART48668
UniProt:
A0A240TU72
LinkDB
Position
2449938..2450789
AA seq
283 aa
MHRRSCLALLALAALPALPALAADAPALLLAQVYRPSLPLQDYWVSEKYDGVRGFWDGRT
LRTRGGETVAAPAWFTAGWPEVPMDGELWAGRGRFSHAQSTARLQQPDDAAWRQMRFMVF
DLPGDKGTFDQRLPALNTLVEELRQPWVQAVPQQRVANDAALQALLHRTVRAGGEGLMLH
RGASMYRAGRSDDLIKVKTHEDTEARVVAHLPGKGRHAGRMGALLLEMPSGQRFRLGAGF
SDADRERPPPVGSWVTYRFRGTHDGGLPRFASFVRVREEMLAR
NT seq
852 nt
+upstream
nt +downstream
nt
atgcaccgcagaagctgcctcgcgttactggcgctcgccgcccttcctgccctgccagcg
ctggccgcagacgcgccggccctgctgctggcgcaggtctaccgacccagcctgccgctg
caggattactgggtcagcgaaaaatacgatggcgtgcgtggcttctgggacggccgcacg
ctgcgcacccggggcggcgaaaccgtggcggcgcccgcctggtttaccgccggctggccc
gaggtgccgatggacggagagctgtgggccgggcgcgggcgtttcagccacgcccagtcc
accgcgcgactacagcagcccgacgacgcggcctggcgccagatgcgcttcatggtgttt
gacctgcccggcgacaaaggcacgttcgaccaacgcctgcccgccctgaacacccttgtc
gaagagctgcgccagccctgggtgcaggccgtgccgcaacagcgcgtggccaatgatgcg
gcgctgcaggcgctgctgcaccgcacggtgcgcgccggcggcgaagggttgatgctgcac
cggggcgcatcgatgtaccgcgccgggcgcagcgacgatctcatcaaggtcaagacacac
gaggacaccgaggcccgcgtggtcgcccacctgcccggcaagggccgccatgcgggacgc
atgggcgcgctgcttttggagatgccctcgggccagcgtttccggctgggcgcgggcttc
agcgatgccgaccgcgaacgcccgccgcccgtgggcagctgggtgacctaccgctttcgc
ggcacccacgacggcggcctgccgcgcttcgccagttttgtgcgggtgcgcgaggagatg
ctggcaaggtga
DBGET
integrated database retrieval system
