Granulicella tundricola: AciX9_2128
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Entry
AciX9_2128 CDS
T01411
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acm
Granulicella tundricola
Pathway
acm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AciX9_2128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acm03400
]
AciX9_2128
Enzymes [BR:
acm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AciX9_2128
DNA repair and recombination proteins [BR:
acm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AciX9_2128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADW69172
UniProt:
E8X211
LinkDB
All DBs
Position
2489775..2492519
Genome browser
AA seq
914 aa
AA seq
DB search
MPAAKKTATKKIAAKKSVAKKSAKKAVKSKASPSDAVDEQLARYRSMRDFDVTAEPSGKA
QEITRESLPFCIQKHAASHLHYDFRLGWNGVLKSWACAKGPSYNVKDKRLAVQVEDHPIE
YGGFEGIIPAGQYGGGTVMLWDQGTWEPQPGHTDVDAGLRDGNLKFIMHGTKMKGKWALI
RMGGHAATEKKPNWLLIKEHDDFERGPDDEAITDSEPKSVITGRTLEEIAKNEDHVWNSK
ETAKPGQAWYRNDVEADKPVKTAALDLGSLPEEHQPTFLKPQLAQETQTPPSADGWLHEL
KLDGYRMQARKDGKKVQMLTRSGLDWTDRVKAVAAEVARLPYDAVTLDGEVVVVAENGTT
NFADLQASFQEGAKNPLTYFCFDLLHLNGHNPRGLSLLERKKLLAEVLTTADRSTLQFSE
HLETSGEEMFHKACELHAEGIVSKKATAPYTEGRNGNWLKSKCLHEQEFVVGGYTLPSKG
GSGIGALLLGYYDDKARFIYAGRTGTGFTQKGSVIIRKRLEPIEAASSPFNNPSADARRG
AIWTRPSMVVQVRFATWTADDQLRQAAFLGIREDKPASEVRRETAAPTPKSAKSATQPTA
ASHTTKPRVAAKLIAAPTMEKAPVRLTHPDKVVDNETHLTKQQLADFYWAVSERMLPHIA
NRPLSLVRCPEGSEKPCFFQKHTNHMLPPGIGSIDVPDKKTGTPEPYITLDTREALAGLA
QMGCLEVHPWGSCNDDLERADQLTIDLDPDELLPWEVLTGAALDVRKRLKDLGLESWVKT
TGGKGLHVVIPIEPELEWPQIKQWCHGFVNLMERADPKLYLTKMTKSARAGKIYLDYLRN
ERGATAVAPYSPRARKGAGVAVPLAWSELDEPERPVFRVATFPEWGGRLKKDVWADLPKT
KQRISKEAQKAAGL
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagcaaagaagacagccaccaaaaagatagccgcaaagaagtccgtcgcgaag
aagagcgcaaagaaagccgtcaagagcaaggcgtcgccgtccgacgcagtcgatgagcag
cttgcgcgttatcgctccatgcgcgactttgacgtcactgccgagccctccgggaaggcg
caggagatcacccgcgaatctctcccgttctgcatccagaagcacgccgcgtcccacctg
cactatgactttcgtcttggctggaatggtgtgctgaagtcctgggcctgcgccaaggga
cccagctataacgtcaaggacaagcgcctggccgtgcaggttgaagatcaccccatcgag
tacggtggctttgagggcatcatccctgcaggccagtacggtggcggcaccgtcatgctg
tgggaccaggggacctgggagccgcagcccggccacacggacgtcgacgccggcctgcgc
gacggcaacctgaagttcatcatgcatggcaccaagatgaagggaaagtgggcgctgatc
cgcatgggcggtcacgctgcgacggagaagaaaccgaactggctcctcatcaaggaacac
gacgactttgagcgcggcccggatgacgaggccatcaccgactccgagcccaagagcgtc
atcaccggccgaacccttgaagagattgcaaagaacgaagatcacgtctggaactcgaag
gagaccgccaagcctgggcaggcctggtatcgaaacgacgttgaggcagataaaccggtg
aagactgccgctctggacctcggctctctgcccgaagagcatcaacctacctttctcaag
ccgcagttggcgcaggagacccagacgcctccctcagcagacggctggctgcatgaactg
aagctcgacggctaccgcatgcaggcccgcaaggacggcaagaaggtccagatgctcacc
cgcagtgggctggactggactgaccgtgtgaaggccgtggccgctgaggtggcgcgcctg
ccctatgacgcagtcaccctggatggagaggttgtcgtggtcgcggaaaacggcaccacc
aacttcgcggacctgcaggcctcgtttcaggaaggtgcgaagaatcccctcacctacttc
tgcttcgaccttctccacctgaacgggcacaatccgcgcggcctgtcgctgctggagcgc
aagaagctccttgccgaagtcctcaccaccgccgaccgatccacccttcagttcagtgag
cacctcgaaaccagcggtgaggagatgtttcacaaagcctgcgagctccatgccgagggt
atcgtctccaagaaggctaccgcaccctacaccgaaggccgcaatgggaactggctcaaa
tcgaagtgtctccatgagcaggagtttgtcgtcggcggctacacgctgccttcaaagggt
ggctccggtattggtgcgctgctactcgggtactacgatgacaaggcacggttcatctac
gccggccgcaccggcaccggcttcacgcaaaagggtagcgtcatcatccgtaaacgtctc
gagcccatcgaggccgcatcctcccccttcaataacccttccgccgatgctcgccgcggc
gcgatctggacccgtccctccatggtggtgcaggtccgcttcgccacctggaccgcggac
gatcagctccgccaggcagccttccttggcatccgcgaagacaagccagcgtccgaggtt
cggcgcgagaccgcagctccgacaccgaagtccgccaagtcagcaacccagccaaccgcc
gcctcacataccaccaagcctcgcgtagccgccaaactcatcgctgctcctacgatggag
aaggctcctgtccgcctcacgcatccggataaggtcgtggacaacgaaactcacctcacc
aagcagcagcttgccgacttctactgggccgtgtccgagcgcatgctgccccacatcgcc
aatcggccactctcgctcgtccgatgtcctgaggggtccgagaagccctgcttcttccag
aagcacacgaaccacatgctgccgcccggcatcggttcgattgacgtgccggacaagaag
accggcacacccgagccttacatcacgctcgacacgcgtgaggccctggcagggctcgcc
cagatgggctgcctcgaggttcacccgtggggctcctgcaacgatgacctcgaacgcgcc
gaccagcttaccatcgacctcgatccagacgagttgcttccctgggaggttctgactggt
gccgctctcgacgtacgcaagcgcctcaaggacctgggcctggagtcctgggtcaagacc
accggcggcaagggtctgcacgtcgtcatccccatcgagccggagctggaatggccgcag
atcaagcagtggtgccacggcttcgtgaacctgatggagcgtgccgatcccaagctttat
ctgaccaagatgaccaagtcggcccgcgccggcaagatctatctcgactaccttcgcaac
gaacgtggggctaccgctgtcgccccttattcaccccgcgcacgcaagggtgcgggcgtt
gctgtgcctctcgcatggtctgagttggacgagcccgagcgccccgtcttccgcgtcgca
accttcccggagtggggtggacggctcaagaaagatgtctgggcggacctgcccaaaacg
aagcagcgcatcagcaaggaagctcagaaagccgcaggcctctaa
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