Aminobacterium colombiense: Amico_0596
Help
Entry
Amico_0596 CDS
T01202
Name
(GenBank) phosphoesterase RecJ domain protein
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
aco
Aminobacterium colombiense
Pathway
aco03410
Base excision repair
aco03430
Mismatch repair
aco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Amico_0596
03430 Mismatch repair
Amico_0596
03440 Homologous recombination
Amico_0596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aco03400
]
Amico_0596
DNA repair and recombination proteins [BR:
aco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Amico_0596
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Amico_0596
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Amico_0596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ADE56731
UniProt:
D5EDU9
LinkDB
All DBs
Position
624685..626349
Genome browser
AA seq
554 aa
AA seq
DB search
MTSFCLRSKLNVTTLEDSCHRIARELSCPPFVAAILEMQGRVSLHDIDKARAWLSPSLDF
FAASCFLGEGARAVAERWQRLSSLGNVVVYGDYDVDGVSSTTLAMELCKERAAGVRYYIP
HRHMEGYGLHRQVVQQLLVAGCDTLIIVDCGTKDGDILKEAQQTGMNVFVFDHHLPEKGE
LPASFIVNPQIDGDKEGKLLCATAVLWLWAYQFKIMPMEWLAEHLDLVALATIADCMTLG
SLNRALVKEGLERIRYTARPGLELLIKRLGLFHRFVNEEQLAMKVIPCLNAAGRLAFADL
AVKVLTGEEPVENHVEELISLNRKRQNLSTRITKEAVKVVEERSKHVLFEESWPVGVLSG
VASRLCSEKNAPVVLAAPVQDWIRGTLRMPEGGNAVQVLDHLSDQLEAWGGHKQAAGFSV
SKDNWEKLRGDLEHILASVEYEDPEISALALHPSQITLQDWKSALDLGPFGMGNPCPLLY
CESYGNEQFLPLGKTGLHLKIQLGSEYLVAFNSVEILKTLSSSHITGWVYHPRVDFWRGQ
PRLQFMLDYIVLDS
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
gtgacatctttttgtttgcgatctaaattaaatgtgaccactcttgaggattcttgccac
agaattgctagagaattaagctgtccaccctttgtagcagctatattagaaatgcaggga
agagtttctctccatgatatcgataaggctcgggcctggcttagtccgagccttgatttc
tttgcagcctcatgttttcttggagaaggcgcaagagcggtggccgagagatggcagagg
ctatcatcccttgggaatgtagttgtttatggagattacgatgttgacggcgtttcatct
accactctcgctatggaattatgtaaagagagggcagcaggggtacgctactatattcct
catcgacatatggaaggatatgggctccatcgccaggttgtacaacaacttcttgtcgca
ggttgtgatacattgatcatcgtggactgtggcacaaaggatggggatattttaaaggaa
gcgcaacagactggaatgaatgtctttgtttttgatcaccacctcccggagaaaggggag
ttgccagcctctttcatagttaatccgcagatagacggtgataaggaagggaagcttctt
tgtgctaccgcggttctttggctgtgggcctatcaatttaaaataatgcctatggaatgg
cttgcagaacatctcgacctggtggcccttgcgactattgctgattgcatgacattaggc
agccttaatagagcgttggttaaggaaggacttgaaagaattcgttataccgcccgacct
gggctggaactacttataaaacgccttggtctgtttcatcgttttgtaaatgaagaacaa
cttgctatgaaggtcattccttgcttaaacgcagcaggccgtcttgcctttgcggacctt
gcagtaaaagtgctgacaggggaagagccagttgaaaaccatgtggaagagcttatttcc
ttaaacaggaagaggcaaaacctttcaacccgtatcactaaagaggcggtaaaggtggta
gaggaacgatctaagcacgttctcttcgaggaatcgtggccagtaggagttctaagcgga
gtggcgagccgtctttgttctgaaaagaatgcccctgtagttttagctgcccctgttcag
gattggattagaggaacattgcgtatgcccgaaggaggcaatgccgtacaggttcttgat
cacctttcagatcaacttgaagcttggggagggcacaagcaggcagcgggattttctgtg
tcaaaagataattgggaaaagctcagaggtgatttagaacacatccttgccagtgtggaa
tatgaggatccggaaatttcagccctggctctccatccgtctcaaattaccttgcaggac
tggaagtcagctctggatctcggtccttttggtatgggaaatccttgtcccttattgtat
tgcgaaagttatggaaatgagcagttcttaccccttgggaaaacggggcttcatttaaag
atacaattgggttcagaatatctggtggctttcaatagtgtcgaaattctgaaaaccctt
tcctcgtcgcacattacaggctgggtataccaccctcgagttgatttttggcgtggtcag
ccccgtcttcaatttatgctcgattatatagtgttagattcttga
DBGET
integrated database retrieval system
