Aminobacterium colombiense: Amico_1001
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Entry
Amico_1001 CDS
T01202
Name
(GenBank) excinuclease ABC, C subunit
KO
K03703
excinuclease ABC subunit C
Organism
aco
Aminobacterium colombiense
Pathway
aco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Amico_1001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aco03400
]
Amico_1001
DNA repair and recombination proteins [BR:
aco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Amico_1001
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
UvrC_RNaseH_dom
HHH_2
GIY-YIG
HHH_5
HHH
UVR
Transposase_20
HHH_3
GIY_YIG_2
UPF0758_N
5_3_exonuc
Chal_sti_synt_N
Motif
Other DBs
NCBI-ProteinID:
ADE57126
UniProt:
D5EEZ4
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Position
complement(1038475..1039950)
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AA seq
491 aa
AA seq
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MINQKLKNTIRNLPLRPGVYIMRDEEGKVIYVGKAKSLRKRVSSYFRHEGFASPRLRKLV
ESIADISVIRTETEAEALIVESRLIKKYKPFFNIDLKMNERYPYIKITDDAFPRLVITRH
KDDDGATYLGPFISAKDVRALLRVAERYFPLRSCKAEVKPDKKKRPCLNYSLGRCLAPCA
ALCSETEYRERVDDVILLLTGQSSELVERIRKRMEEAAHSLDFEKAARHRDAISAIWRLS
RQRISSSLREDIDSETWEALNKLQCLLHMDTLPWRIDGFDISHMAGHETYGVVVVFEQGV
SNPSLYRRFKVRTVEGIDDFRSIEEVVKRRYSKMLENNEPLPQLILIDGGPIQLEFAKKA
LSELKMEKIPAISLAKREELIYHNEKEPPIRLDWTDPVLRLLQRVRDESHRFAIKSHRRG
RGMVLTRSVLEEIPGVGKHMAASLLSSFGSVKKIAVLTPEELMQVKGIGPVLAKNIAAFF
RGEDNESETEA
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgataaaccaaaaattgaaaaatacgataagaaatcttccccttcgccctggggtttat
atcatgcgcgacgaggaagggaaagtaatatacgtaggcaaagcaaaatcccttcgaaaa
agagtgtcgtcttattttagacatgagggttttgcttctccccgtttgcgtaaacttgta
gaaagcattgctgatatatctgttatacgaactgaaacagaagcggaggcccttattgta
gagtcacgccttattaaaaaatacaagccctttttcaatatagatctcaaaatgaatgaa
cgctacccttatattaaaataacggatgacgcgttcccgcggcttgtaattacccggcat
aaggatgacgacggcgcaacatatctaggtccctttatcagcgcaaaagatgttagggcg
cttttaagagtggctgaacgttatttcccccttcggagttgtaaggcagaagtgaagcca
gataagaaaaaaaggccctgtctcaattattcccttggaagatgtcttgcaccttgtgca
gcactttgcagtgaaacagagtacagagaaagggttgacgatgttattctgcttttaaca
ggacaatcttccgaacttgtagaacgaatacgaaagcggatggaagaagccgcgcactcc
cttgattttgaaaaagctgcacgccaccgtgatgctattagcgccatatggcgcctctcc
cgtcaacggatatcttctagtcttcgcgaggatatcgatagtgaaacatgggaagctctg
aataaattgcagtgccttctccatatggatacccttccatggcgaatcgacggatttgat
atttcccatatggctggtcacgaaacctatggtgtcgtagtggtctttgaacaaggggtt
tcgaacccctctctatacaggcgatttaaagtacggaccgttgaaggtatcgatgatttt
cgatctattgaagaagttgtaaaacgtcgctatagcaagatgcttgaaaataacgaacct
cttcctcagcttattctcatagatggcggccctatacagctggagtttgcgaaaaaagcc
ctttctgaattgaaaatggaaaagatacctgccatttccctggcgaaaagggaggaactg
atataccataacgaaaaagaaccgccaattcgtcttgattggacagatccggtccttcgc
cttttacaacgtgttcgtgatgaatcccatcgctttgccattaagagccataggcgagga
aggggcatggttttgacgcgttcggtgctggaagaaatccctggagtaggcaaacacatg
gctgcttctcttctttcctcgttcggcagcgtcaaaaaaatagctgtactaactcctgag
gagctgatgcaagttaaagggataggtccggttttagccaaaaatatagctgcatttttc
agaggtgaagacaatgagtctgaaacagaggcgtga
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