Anopheles coluzzii: 120961572
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Entry
120961572 CDS
T07312
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
acoz
Anopheles coluzzii
Pathway
acoz03013
Nucleocytoplasmic transport
acoz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
acoz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120961572
03015 mRNA surveillance pathway
120961572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acoz03019
]
120961572
Enzymes [BR:
acoz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
120961572
5.6.2.5 RNA 5'-3' helicase
120961572
Messenger RNA biogenesis [BR:
acoz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
120961572
mRNA cycle factors
Common to processing body (P body) and stress granule
120961572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
Helicase_RecD
DEAD
AAA_22
ATPase
nSTAND3
AAA_16
SRP54
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
120961572
NCBI-ProteinID:
XP_040241301
LinkDB
All DBs
Position
2:complement(663204..668507)
Genome browser
AA seq
1161 aa
AA seq
DB search
MSVDAYDGTTGSQSLTFVDTEENYFVGADSQGTDYDFRDFTIPSQSQTQASQLDHLGGGS
QVNGFGRRIGVDPTKLSGITSAIGELQFEEDEDEIDPAENKDLPPHACRYCGIHEPSTVV
MCNICKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHADGPLGETVLECYSCAVRNVFVLG
FIPAKSDSVVVLLCRQPCAAQNSIKDMNWDQEQWKPLIADRCFLFWLVKIPTEQDQLRAR
KVSAAQINKLEELWKENVDATFQDLEKPGIDKEPQQVQLRYVDGYQYQNTFGPLVKLEAD
YDEKLKESQTQENIEIRWDTGLNKKTIAYFTLAKNDGDMKLMHGDELKLRYVGELHKPWS
CIGHVIKVPDNYGDDVGLELKHNHQAPIERTSNFSVDFIWKGTSFERMQQALRKFAMDAK
SVSNYIYARLLGNVRADGAEEVLFRLNLPKHFSAPNLPDLNRSQVYAVRHALQRPLSLIQ
GPPGTGKTVTSATIVYQLARLNSGPILVCAPSNTAVDQLTEKIHRTNLKVVRVCARSREA
IDSPVSFLALHNQIRNMAQNSELKKLQQLKDETGELSLSDERRYRSLKKQAERELLEAAD
VICCTCVGAGDLRLQRIKFNSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGPVVM
CKKAAKAGLSQSLFERLVALGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCADERK
LKVDFPWPSPDCPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLKAGIKPDQIGI
ITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRANEHQGIGF
LNDPRRLNVALTRAKYGIIIVGNPKVLAKQELWNHLLNFYKDKKVLVEGSLNNLKESMIQ
FTKPKKIINTLNPGSHFMTNAMYDAKEVLGGGYFDRNPGPSTSYAHNPLAGYGNASAYHQ
QQGGFVDVPGHGGSGTTASANTPLDAFMRKVHDPIGYISPQRTHPAVSNMPVPVGMFINM
SNAPSRFYQQQQQAAIQAAKQTRRPVVGKTASQLLASGSVSTSSGGKSSRPRPIGPPSSS
GNNAHISGTANASLTQGMSQNMSQPGFSLSQQPEFSQDYMGEYQSQMDNILSQESNYHSQ
SGPGDRLPFELHSSSQFSQPY
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcttacgacggaaccacgggttcccaatcgttgaccttcgtcgataca
gaggagaactattttgtgggagccgattcgcagggaacggactacgattttcgcgacttt
acgattccttcgcaaagtcaaacccaagcttcgcagctcgatcatctgggcggtgggagc
caggtgaatggattcggccgtcgcatcggtgtggatccgacgaaattgtccggaattacc
tcggccatcggtgagctgcagtttgaggaggatgaggatgagatagatccagcggagaat
aaggatttaccaccgcacgcctgccgttactgtggcatacacgagccaagtacggtggtt
atgtgtaacatatgtaaaaaatggttctgcaacggacgcggcagcacgtctgggtcacac
attgtgaatcatcttgttcgcgcaaagcaccgtgaggttaccttacatgcggacggtccc
ctcggagagacggtcctggagtgttactcctgtgccgtccggaacgtgtttgtgctcggg
tttatcccagcgaaaagcgactctgtagttgtgctgttgtgcagacaaccctgtgcagca
cagaactccatcaaggacatgaactgggatcaggagcagtggaagccgttgatcgccgat
cgttgcttcttgttttggctggtaaagattccaaccgagcaggatcaattgcgtgcgcgc
aaggtgtctgctgcccaaattaacaagctggaagagctgtggaaggaaaatgtggacgca
actttccaggatctcgagaagcccggcatcgacaaggaaccgcagcaggtacagttgcgt
tacgtggacggatatcagtatcagaacacgttcggaccgctggtaaagctggaagcggac
tacgatgaaaagctgaaagagagtcaaacgcaggaaaacattgaaatccgttgggacact
gggttgaacaagaaaacgatcgcttactttacactggcaaagaacgacggagacatgaag
ctgatgcatggagatgagctaaagttgcgctacgtcggagagctgcacaaaccgtggagc
tgcatcgggcacgtaatcaaggtgccggacaactatggcgatgatgtggggttggagctg
aagcacaaccatcaggcaccgatcgagcgtaccagcaacttctcggtcgatttcatctgg
aagggcacgtctttcgagcgcatgcagcaagcgcttcgcaagtttgcgatggacgcgaaa
agtgtttcgaactacatttacgcacgcttgctgggaaacgtccgtgccgatggtgccgaa
gaggtgctgtttaggctgaatttgcccaagcatttcagtgcccccaacctgcccgacctg
aatcggtctcaggtctacgcggttcgccacgcactgcagcgccccttgagccttatccag
ggtccaccgggcacgggcaagacggtcacttcagcaacgatcgtgtaccagttggcgcgg
ttaaacagtggccccatattggtctgcgcaccgagtaacactgccgttgatcagttgacg
gagaagattcatcgcacgaatctgaaagttgtgcgcgtgtgtgccagatcacgcgaagcg
atcgattccccagtcagtttcctagcgctgcacaatcaaattcgaaatatggcacaaaat
tcggagctaaagaaactgcaacagttaaaagacgaaacgggtgagctaagcctctcagat
gagcgacgttatcgatcgttgaagaaacaggccgagcgcgaactgttggaagcggctgat
gtgatatgctgcacctgcgttggagcgggcgatcttcgtctgcagcgtatcaagttcaac
tccatcttgatcgatgaatcgatgcagtcaacggaaccggaatgtatggtgcctgtagtg
ctgggtgccaaacagctcatcctggtcggtgaccactgtcagctgggcccggtcgtgatg
tgtaaaaaggcggctaaggccggcctgtcgcaaagtctgttcgagcggctagtggcgcta
ggcatccgtccattccggctcgaggtgcaatacagaatgcacccggagttgtcacagttt
ccttcgaacttcttctatgaaggcagcctgcaaaacggcgtgtgcgcggatgagcgtaag
ctcaaagtcgactttccatggccctctccggactgtccgatgtttttcctggtcacacag
ggccaggaagaaatcgcgggatcgggtacctcgtatctgaaccgcacggaggcatcgaat
gtggaaaaaataacgacccgatttttgaaggccggtattaaacccgatcaaatcggcatc
attacgccgtacgaagggcagcgagcgtacctggtacagtacatgcagtaccagggctca
ttgcactcgaagctataccaggagatcgaaattgccagcgtggatgcgttccagggacgc
gagaaagatatcattatcatgtcttgtgtgcgggcgaatgagcaccagggcatcggtttt
ctgaacgacccccgtcggctgaacgtagctctgacccgtgccaaatacggtatcattata
gtgggcaacccgaaggtattggcgaagcaagagctgtggaaccacttgctgaacttctac
aaggacaaaaaggtgttggtggaaggatcgctgaacaatctgaaggaatcgatgattcag
tttaccaaaccgaaaaagattatcaatacgctcaatcccggatcacatttcatgaccaat
gccatgtacgacgcaaaggaagtgctgggcggtggttattttgatcgcaatcccggacca
tcaacaagttacgcgcataacccgttggcagggtacggaaacgcgagtgcttaccaccaa
cagcagggaggatttgtggatgtgccggggcacggtggaagcggcactactgctagcgcg
aacacaccgctagatgcgtttatgcgtaaggtgcacgaccctatcggctacatttcgccc
cagcgcacccatcctgcagtgagcaatatgccagtcccggtgggaatgttcatcaatatg
tcgaatgctccctctcgcttctatcagcagcagcagcaggcagcaattcaggcggcaaag
caaactcgtcgcccggtggttggtaagactgctagccaactgcttgcatctggctcagta
tcgacatccagcggtggcaagtcgagccgtccacgtccgataggcccaccaagcagtagc
ggcaacaatgcgcacatcagcggtacggcgaacgcatcgcttacgcagggcatgtcgcaa
aacatgtctcagccgggctttagcctatcgcagcagccagaattttcgcaggattacatg
ggcgagtatcagtcacagatggataacatcttgtcgcaggagtccaactatcacagccaa
tccgggccgggcgaccgtctgccattcgaactgcactcgagttcgcagttttcccaaccc
tactga
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integrated database retrieval system
