Anaeromyxobacter dehalogenans 2CP-1: A2cp1_0836
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Entry
A2cp1_0836 CDS
T00833
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acp
Anaeromyxobacter dehalogenans 2CP-1
Pathway
acp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A2cp1_0836
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acp03400
]
A2cp1_0836
Enzymes [BR:
acp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A2cp1_0836
DNA repair and recombination proteins [BR:
acp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A2cp1_0836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACL64188
UniProt:
B8JDU3
LinkDB
All DBs
Position
complement(936643..938694)
Genome browser
AA seq
683 aa
AA seq
DB search
MPACPAGARRGRRLPRHAGGGELSRVARAPVPIYRAQLATLVATPPAGDGWVHETKYDGY
RIGCSLEGGRATLWSRRGNDWTAQFPEVAQAAEALAARSALLDGEVAAVLPGGRTSFQAL
QQAFSGGRRSLAYFVFDLLWLDGEDLSGRPLLERKDALRRLLGARGAVLRYAPHVEAPGA
EVLREACRLGLEGIVSKRADAPYRPGRNTTWTKAKCLARQELVIGGFTDPEGSRQGIGAL
LVGFHEGGALRFAGKVGTGFTQASARALRARLDRLGRADPPFTPRPPGALGRIAHWVRPE
LVAEVAFTEWTDDGKVRHPSFQGLREDKRAADVVREVPGGAPPAPPVPPAPAPAPAAAGR
ARRRAAAGAAGEVVIGGVRLSHPERTVFPGDGRAALTKADVARYYDAVAGAMVPHLRGRP
LTLFHCPEGIAGECRFMKHSKTWAPPAVRRVRIQEKTKLGEYLIADDRAALLALVQMDVL
ELHTWNSTVEALEQPDRIVLDLDPGPEVPWREVVRAARLLRSALEALGLAAFVKTTGGAG
LHVVTPLVPRRRWEDCLAFARGLAATVARHEPRAFTVALARAGRERKILLDYLRNNRTNT
SVAAFSLRARPGAPASVPVAWDELGPRLRPERLDARTVPRRLARLGADPWAGWARAARPL
GDAHLAAVGAAPVDQPARGGGRR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgccggcctgccccgccggcgcccgccgggggcgccgcttgccccgccacgccgggggt
ggtgagctttcccgcgtggcccgcgcgcccgtcccgatctaccgcgcccagctcgcgacg
ctcgtcgcgaccccgccggcgggggacggctgggtccacgagacgaagtacgacggctac
cggatcggctgttcgctggagggcgggcgcgccacgctgtggagccggcggggcaacgac
tggaccgcgcagttccccgaggtggcgcaggccgccgaggcgctggcggcgcggagcgcg
ctcctcgacggcgaggtggcggcggtgctgcccggcggccggaccagcttccaggcgctc
cagcaggcgttctccgggggccgccgctcgctcgcctacttcgtgttcgacctgctctgg
ctggacggcgaggacctgtccgggcggccgctgctcgagcgcaaggacgcgctgcgccgg
ctcctcggcgcgcgcggcgccgtgctccggtacgcgccgcacgtggaggcgccgggcgcc
gaggtgctccgcgaggcgtgccgcctcggcctggaggggatcgtctcgaagcgcgccgac
gcgccgtaccgccccgggcggaacaccacctggacgaaggcgaagtgcctcgcccgccag
gagctggtgatcggcgggttcaccgatcccgagggcagccgccagggcatcggggcgctg
ctggtgggcttccacgagggcggcgcgctgcgcttcgccgggaaggtcggcaccggcttc
acgcaggcgtcggcgcgggcgctgcgcgcgcgcctcgatcgcctgggccgcgccgacccg
ccgttcacgccccggccgccgggcgcgctcgggcggatcgcgcactgggtgcggccggag
ctggtggccgaggtggcgttcaccgagtggaccgacgacgggaaggtgcggcatccgtcg
ttccaggggctgcgcgaggacaagcgcgccgcggacgtggtgcgcgaggtccccggcggc
gcgccaccggccccgccggtcccaccggcgcctgcgcctgcgccggcggccgcgggtcgc
gccaggcgccgcgcggcggcgggcgcagccggcgaggtggtgatcggcggcgtccggctc
tcgcacccggagcgcaccgtgttcccgggcgacgggcgggccgcgctcaccaaggccgac
gtggcccggtactacgacgcggtggccggcgcgatggtgccgcacctgcgcggccgcccg
ctgaccctgttccactgcccggagggcatcgccggcgagtgccgcttcatgaagcactcg
aagacctgggcgccgcccgccgtgcggcgggtgcgcatccaggagaagaccaagctgggc
gagtacctgatcgccgacgaccgcgccgcgctgctcgcgctggtgcagatggacgtcctc
gagctgcacacctggaactcgaccgtggaggcgctggagcagccggaccggatcgtgctc
gacctcgacccggggccggaggtcccgtggcgcgaggtggtgcgcgcggcgcggctgctg
cgctcggcgctggaggcgctgggcctcgccgcgttcgtgaagaccaccggcggcgcgggg
ctgcacgtggtgacgccgctggtgccgcgccggcgctgggaggactgcctcgcgttcgcg
cgcgggctcgccgccacggtggcgcgccacgagccgcgcgcgttcaccgtggcgctcgcg
cgcgccgggcgcgagcggaagatcctcctcgactacctgcggaacaaccggaccaacacc
tcggtggccgcgttctcgctgcgcgcgcggccgggcgcgccggcctcggtgccggtggcc
tgggacgagctgggcccgcggctgcggccggagcggctggacgcgcgcaccgtcccgcgg
cggctggcgcggctcggcgcggatccgtgggccggctgggcgcgcgccgcccggccgctc
ggcgacgcgcacctcgccgcggtgggcgccgcgccggtggaccagccggcgcggggcggg
gggcggcggtga
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