Anaeromyxobacter dehalogenans 2CP-1: A2cp1_0935
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Entry
A2cp1_0935 CDS
T00833
Name
(GenBank) DNA ligase D, 3'-phosphoesterase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
acp
Anaeromyxobacter dehalogenans 2CP-1
Pathway
acp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
acp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A2cp1_0935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acp03400
]
A2cp1_0935
Enzymes [BR:
acp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A2cp1_0935
DNA repair and recombination proteins [BR:
acp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A2cp1_0935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ACL64286
UniProt:
B8JEG0
LinkDB
All DBs
Position
1052813..1055182
Genome browser
AA seq
789 aa
AA seq
DB search
MPDRLERYRAMRDPGRTPEPFGGGAPGEDGSGSARAFVVQKHAARRLHWDFRLELGGTLR
SWAVPKGPSADPSDRRMAIEVEDHPVEYADFEGIIPAGNYGAGAVIVWDRGAWWPVGDPE
DGLARGKLVFRLRGHKLRGEWTLVRTRAGDGGKRQWLLLKHRGDPFAGPGRPFPEASVLS
GRTVEELAAGTSRAEAAAREAARLGAPARPLPRRGPAPMAPGARRAPFDRAGWLFEVAQG
GQRVSARREGTGAVLRSPQGEDLGPRFPEVALAVALLPGDPVLDGELVVLDDEGRASAEA
LEARARTGASAAAGAALQRPATLFAFDLLALGGRDLRALALADRKRLLAEVAPAVGSVRF
AGHVEREGKALHREAADRGLPGVLARRAAAPYRSGRSADWVLVPAARSAAPRPPAPRPRG
DAPAATGAVPVERTVNVVHPEKVWFPEDGITKGELVAYHRAIAPFMLPYLADRPLVLTRF
PEGIHGRSFLQEDAPAWRPRWLRAATVHAGEGGRTLDHLLVDDADGLAWLVDQGAIPLDV
LAGRAGALERPDWCVLELDAGDAPFAQGVRVARALHALCDAAGLPSHVKTTGERGLHVLV
PLGGQLTHAQARTLAELLARTVEAELPDLATTARTAAARGGRVHVDALRNGHGTAIAAPY
TVRPRPGAPVSTPLRWSEVNARLDPARFTVRTVPARVARLGRDPLGPVLTERPDLLRALA
RLRARPGAVGCGRPARSAPFVTRRTPGDATRRRARRLVVPARMWGQVAEPRPGGDFAAMC
RPTRNRSRQ
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaccggctggagcgataccgcgccatgcgcgacccgggccggacgccggagccg
ttcggcggcggtgcgcccggcgaggacggatccggctcggcgcgggcgttcgtcgtccag
aagcacgcggcccggcgcctccactgggacttccggctcgagctgggcgggacgctgcgg
agctgggcggtgccgaagggcccctccgccgatccctccgaccggcgcatggccatcgag
gtggaggatcacccggtcgagtacgcggacttcgaggggatcatccccgccggcaactac
ggcgcaggggcggtgatcgtgtgggatcgcggcgcgtggtggccggtgggcgatcccgag
gacggcctggcccgcggcaagctcgtgttccgcctgaggggccacaagctgcgcggagag
tggacgctggtccggacccgcgccggggacggcgggaagcgccagtggctgctcctgaag
caccgcggcgatccgttcgccgggccggggcggccgttcccggaggcgtccgtgctctcg
gggcgcaccgtggaggagctcgcggccggcacgagccgggccgaggccgccgcccgcgag
gccgcgcgcctcggcgcgccggcgcgtccgctcccgcggcgggggcccgcgccgatggcg
ccgggcgcgcgccgggcgccgttcgaccgcgcgggctggctgttcgaggtggcgcagggc
ggccagcgcgtgtcggcgcgccgcgagggcaccggggcggtgctgcgctcgccgcagggt
gaggacctcgggccgcgcttcccggaggtggcgctcgccgtggcgctcctgcccggcgat
ccggtgctcgacggcgagctggtggtgctcgacgacgaggggcgggcgtcggccgaggcg
ctcgaggctcgcgcccgcaccggcgcgagcgcggccgccggcgccgcgctgcagcggccg
gcgacgctgttcgcgttcgacctcctggccctgggtgggcgcgacctgcgcgcgctggcg
ctcgccgaccgcaagcggctgctcgccgaggtggcgcccgcggtcggctcggtgcgcttc
gccggccacgtcgagcgcgaggggaaggcgctccaccgcgaggcggcggaccggggcctc
cccggcgtgctcgcccggcgggccgcggcgccctaccggtccggccgatccgccgactgg
gtgctcgtgcccgccgcccggagcgcggccccgcgcccgccggcgccgcgcccccggggc
gacgcgccggccgcgaccggcgccgtcccggtggaacgcaccgtgaacgtggtccatccg
gagaaggtctggttcccggaggacgggatcacgaagggcgagctcgtcgcgtaccaccgg
gccatcgcaccgttcatgctgccgtacctggccgatcgtccgctggtgctcacccggttc
ccggaaggcatccacggtcgcagcttcctgcaggaggacgcgccggcgtggcggccgcgc
tggttgcgcgcggcgacggtgcacgcaggggaggggggccgcaccctcgatcacctcctg
gtggacgacgccgacggcctcgcctggctggtggatcagggcgcgatcccgctcgacgtg
ctggcgggccgcgccggcgcgctggagcggccggactggtgcgtgctggagctcgacgcg
ggcgacgcgccgttcgcgcagggggtgcgggtggcgcgcgcgctccacgcgctgtgcgac
gccgccgggctgccgagccacgtcaagaccaccggcgagcgggggctgcacgtgctcgtc
ccgctcggcggccagctcacgcacgcgcaggcccgcacgctcgccgagctgctggcgcgg
acggtggaggccgagctgccggacctggccaccaccgcccgcacggccgcggcgcgcggc
ggccgcgtgcacgtcgacgcgctgcggaacggccacggcaccgccatcgcggcgccgtac
acggtgcgcccgaggccgggggcgccggtgtccacgccgctgcgctggagcgaggtgaat
gcccgcctggacccggcgcggttcaccgtgcgcacggtgcctgcgcgcgtggcccggctc
ggacgcgatccgctcgggccggtcctgaccgagcgcccggatctgctgcgcgcgctcgcg
cgcctgcgggcgcggccgggtgcggtcgggtgcggtcggccggcgcgcagcgcgccgttc
gtgacgcgccgcacgcctggggatgcgacccgccgccgcgcgcgccgcctcgtggtgccg
gcgcgcatgtggggacaggtggccgaaccccgcccggggggcgactttgcggcaatgtgc
cggccgacgcgcaatcgttcgcgccaatga
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