Alysiella crassa: LVJ80_14000
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Entry
LVJ80_14000 CDS
T08264
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
acrs
Alysiella crassa
Pathway
acrs03410
Base excision repair
acrs03430
Mismatch repair
acrs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
acrs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LVJ80_14000 (recJ)
03430 Mismatch repair
LVJ80_14000 (recJ)
03440 Homologous recombination
LVJ80_14000 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
acrs03400
]
LVJ80_14000 (recJ)
DNA repair and recombination proteins [BR:
acrs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LVJ80_14000 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LVJ80_14000 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LVJ80_14000 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
UOP06800
LinkDB
All DBs
Position
complement(2694338..2696059)
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AA seq
573 aa
AA seq
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MFRKKIQTRTVNPDHLATLIQSGADPLLAQLYAARAVQNPDELDDHLQLLIPYQQLTNCE
RAAQRLAQAIEQQEKILIIADYDADGATACSVAMKGLGAMGAVVDFFVPNRFEHGYGLTP
ELADIAAQKGANLIVTVDNGISSREGVARAYELGMDVLVTDHHHAGDHVPDCIIVNPNQK
GCTFPSKNLAGVGVIFYVLMALRAELRARHYFSGSLKEPNLGDLLDLVAVGTVADVVPLD
HNNRILVSQGLKRIRAGKTGYGILALFQAARYDAKKAQPMDIGFKIAPRINAAGRLDDMS
VGIACLLAQDWEMAQSIAAELNELNHTRQEIEQGMLQQILGEFPDRLPENQTTLTAYRPD
FHQGVVGIVASRLKDKFYRPTFVFAPDDDGNLRGSGRSIQGVHLRDVVDTIAKQCPDLIY
KFGGHAMAAGLTMRGDGLAQFQAAFEDVVAKLVDKDILSQIFLTDGSLNAADLTLERVQF
LATQVWGQGFPQPTFCDEFVITRQQSMGADGKHRKAWLKKNGQNQQEVEAVFWRCEHELP
EEIRVVYRPVVNEWGNRVDLQLYVEHWEEVLPF
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgcaaaaaaattcaaacccgtacagtcaatcccgaccatcttgccacgctgatt
caatcgggtgcagacccgcttttggcgcaactttacgcggcgcgcgcggtgcaaaatccc
gatgaattagacgaccatctgcaattactcattccctatcaacaattgaccaattgtgaa
cgcgccgcgcaacgactcgcccaagcaattgaacaacaagaaaaaatcctgattatcgcc
gattatgatgcggacggcgcaacggcgtgttcagtcgccatgaaaggtttgggggcgatg
ggggcggtggtggatttttttgtccccaatcgttttgaacatggctacgggctgacccct
gaattggcggatattgcggcgcaaaagggcgcgaatttgattgttacggtggacaacggc
atttccagccgcgaaggggtagcgcgcgcctatgaattgggcatggacgtgttggtaacc
gaccatcatcacgcaggcgaccatgtgcctgattgcattattgtcaatcccaatcaaaaa
ggttgcacttttcccagcaaaaatttggcgggagtgggggtgattttttatgtgttgatg
gcgttgcgggcggaattgcgggcacggcattatttttcaggcagcctgaaagagccaaat
ttgggcgatttattggatttggtggcggtgggaacggtggcggacgtggtgccgcttgac
cataataaccgcattctcgtttcgcaaggtttgaaacgcattcgggcgggcaaaacgggt
tatggcattcttgccctgtttcaggctgcccgttatgacgcgaaaaaggcgcaaccgatg
gacattggtttcaaaattgcgccgcgcattaatgcggctgggcggctggacgatatgtcg
gtgggcatcgcgtgtttattggcgcaggattgggagatggcgcaatccattgcggcagaa
ttaaatgaattaaatcatacccgtcaagaaattgaacagggcatgttgcaacagattttg
ggcgaatttcccgacaggctgcctgaaaatcaaaccacgctcacggcgtatcgccccgat
tttcatcaaggcgtggtgggcattgtggcgagccgtttgaaagacaaattttatcgccca
acttttgtgtttgcccccgatgatgatggcaatttgcgcggttcggggcgttccattcag
ggggtgcatttgcgcgatgtggtggacacgattgcaaaacaatgtcctgatttgatttac
aaatttggtggtcatgcgatggcggcgggtttgaccatgcgcggcgatggtttggctcaa
tttcaggctgcctttgaagatgtggtggcgaaattggtggacaaagatattttgtcgcaa
atttttctcaccgatggcagtctgaacgccgccgatttgactttggaacgcgtccaattt
ttagccacgcaagtgtggggacaaggtttcccccagcccacattttgcgatgaatttgtg
attacgcgccaacaaagcatgggcgcagatggcaaacaccgcaaagcatggttgaaaaaa
aatgggcaaaatcaacaggaagtggaagccgtattttggcgatgtgaacacgagttgccc
gaagaaattcgcgtggtgtaccgccctgtggtgaacgagtggggcaatcgggtggatttg
caattgtatgtggagcattgggaagaagtgttgccgttttga
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