Anolis carolinensis (green anole): 100565521
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Entry
100565521 CDS
T01608
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
acs
Anolis carolinensis (green anole)
Pathway
acs03030
DNA replication
acs03410
Base excision repair
acs03420
Nucleotide excision repair
acs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
acs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
100565521 (lig1)
03410 Base excision repair
100565521 (lig1)
03420 Nucleotide excision repair
100565521 (lig1)
03430 Mismatch repair
100565521 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
acs03032
]
100565521 (lig1)
03400 DNA repair and recombination proteins [BR:
acs03400
]
100565521 (lig1)
Enzymes [BR:
acs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100565521 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
100565521 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
100565521 (lig1)
DNA replication proteins [BR:
acs03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
100565521 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
100565521 (lig1)
DNA repair and recombination proteins [BR:
acs03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
100565521 (lig1)
NER (nucleotide excision repair)
Other NER factors
100565521 (lig1)
MMR (mismatch excision repair)
Other MMR factors
100565521 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
100565521
NCBI-ProteinID:
XP_003224638
Ensembl:
ENSACAG00000011085
UniProt:
H9GHC9
LinkDB
All DBs
Position
Un
Genome browser
AA seq
913 aa
AA seq
DB search
MQSTIRSFFQPLTQAKPGKGVAENSEEETTPKKKPVNSEKPVNGTALCANIPENSSAKKD
EDNSVKSEGGKDTKSGESKQESICLPEQSKPVENNSPSTSPAASNSPSPSSIPRRKTARK
QVPKRKLEDEVNSYNNSQEVLSAKRQKGDDDGDGSHGESDAKPMQVKEVKDKKEEDSELV
EREEETEAEEKKMLTSSKLSNKAISSFFAPRKTSVKADKKQTPGSEENVPPAKSHNEGKN
HESNSVAKDSPKASPTLEPSEYNSAKSNYHPIHDACWGSGQRVPYLAVARTFEWIEQESA
RLKIIETLSNFFRSVIALSPEDLLPCVYLCLNRLGPAYEGLELGIGKTILMKALAQATGR
QLDQIKAEAAEKGDLGLVAESSRTTQGTMFAPPKLGAGAVFGKLQAIGRMMGSSSMNKKI
DIIKSLFVACRHSEARYIARSLEGKLRIGLAEQSVLSALAQAASLTPPGQKFPPEILDAS
KGKSAETRKSWLDERALIVKQAFCELPNYDIIVPVLLEHGVESLPKHCKITPGIPLKPML
AHPTKGIGEVLKRFEEAAFTCEYKYDGERAQIHILENGEVHIYSRNQENNTTKYPDIVSR
IPKVKKSTVESCILDAEAVAWDPDSKQIQPFQVLTTRKRKDVDTEDIRVQVCVYAFDMLY
LNGQSLVREPLTQRRTLLRDSFTEVEGQFLFATSMDTSNTDEIAEFLERSIKDSCEGLMV
KTLEVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGKGKRAGIYGGFLLACYD
DESEEFQSICKIGTGFTDEDLEKLHTSLKAHVIPQPRPYYRWGGTAEPDHWLETHHVWEV
KCADLSISPVHRAAAGLVDEEKGISLRFPRFLRLRDDKKPEEATTSAQVAELYRKQQQIQ
NQQSVENGNDDFY
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgcagagcacaataagatcgttcttccagccactaacacaggcaaagcctggaaaagga
gtagcagaaaacagtgaagaagaaaccactcccaaaaagaaaccagtaaactctgaaaag
ccagtaaatggtacagcactctgtgcaaacatcccagagaattcatcagccaaaaaagat
gaagacaattctgtgaaatcagaggggggaaaagatacaaagtctggtgagagcaagcag
gaatctatctgtcttcctgagcaaagtaaacctgttgagaacaactccccaagtaccagc
ccagctgcatctaattcaccctcaccttctagcatcccacgacgcaagactgctcgcaag
caggtccctaaacgtaaattagaggacgaagtcaacagctataataattctcaggaggtt
cttagtgccaagaggcagaaaggagatgatgatggagatggttcacatggagagtcagat
gcaaaacccatgcaagtgaaagaagtgaaagacaagaaagaagaggattcagaattggta
gagcgtgaagaagagacagaagcagaagaaaagaagatgcttacatcctctaagctatcc
aacaaggccatctctagcttttttgcccccaggaaaacctctgtgaaagcagacaaaaag
cagacacctggctcagaagaaaatgtgcctccagcaaagagtcataatgaaggcaaaaac
catgagtcaaatagtgtggctaaagattctccaaaggcctctcccacacttgagccttca
gagtacaactcggcaaagagcaactatcatcctatccatgatgcttgttggggttctggt
cagagagtaccatacctggctgtggctcgtacctttgagtggattgaacaggaatctgcc
cggttgaaaattatagagactttgagcaatttttttcgctctgtgattgccctatctcct
gaagacctgctgccctgtgtctatctttgtctgaatcggctaggcccagcatacgagggt
ttagaactgggtattggcaaaaccatcctcatgaaagctttggctcaggccacaggtcgg
cagctggatcagatcaaggcagaggcagctgagaaaggagatctgggattagttgctgaa
agcagccgcaccacacaaggcaccatgtttgccccaccgaagcttggtgcgggtgcagtc
tttggcaaactgcaagcaattgggcgcatgatgggaagctcttccatgaacaagaaaatc
gacataatcaagtccttgtttgttgcttgtcgccactcagaggctcgctacattgctcga
tcactggaagggaagctgcggattggattagcagaacaatctgtcctatcagctctggcc
caggcagcatcactcactcctccagggcaaaaattccccccagaaattctggatgcttca
aaaggcaaatctgcagagacccgcaaatcctggctagatgagagagccttgattgttaag
caagccttctgtgaactgccaaattatgacatcattgtgcctgtcctcctagagcatggt
gtggagagcctgcctaagcactgcaaaatcacaccaggaatccccttaaagcccatgctg
gctcacccgacaaaaggaattggagaagtattaaagcgttttgaagaagccgcttttacc
tgtgaatataaatatgatggggagcgagcacagatccacatcctggagaatggagaagtg
catatctacagccggaaccaagagaacaacacaaccaaataccctgacattgtgagccgt
atccccaaggtaaaaaagagcactgtagagtcgtgtatcttggatgcagaagctgtggcc
tgggatccggattccaaacagatccagccattccaagtactgactactcggaagcgtaaa
gatgtagatactgaagatatccgagtgcaggtctgcgtatatgcatttgacatgctctac
ctcaatgggcagtctctggtccgggaacccttaacccagcgccgaaccctactacgggat
tccttcactgaggttgaaggtcagttcctctttgccacctccatggacacaagtaataca
gatgagatagcagagttcctggaacgctccatcaaagactcttgtgaggggctaatggta
aaaacattggaagtggatgccacatatgaaattgcaaagagatcccacaactggctgaag
ctgaaaaaagattatctggatggtgtgggggacactctggacctggtggtgattggtgcc
tacttggggaagggaaagcgtgcaggcatctatggcggcttcctcctggcttgttatgat
gatgaaagcgaggagttccagagcatctgcaagattggcactggatttacggatgaggac
ctcgagaaacttcatacctctcttaaggcccatgtcattccacagccacggccatattac
cgctggggtggcacagcagagcctgaccactggctggagacacatcatgtctgggaagtg
aagtgtgctgacctgtcaatttctcccgtccacagagcagcagctggactggtggatgaa
gaaaagggcatctccctgcgcttccccagattcctacgcctccgagatgataagaaacca
gaggaagccactaccagcgctcaggtggctgagctataccggaaacagcaacagatccag
aatcagcagtcagtggaaaatggaaatgatgatttctactag
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