Actinoplanes sp. L3-i22: L3i22_003140
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Entry
L3i22_003140 CDS
T08939
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
actl
Actinoplanes sp. L3-i22
Pathway
actl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
actl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L3i22_003140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actl03400
]
L3i22_003140
Enzymes [BR:
actl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L3i22_003140
DNA repair and recombination proteins [BR:
actl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L3i22_003140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
BCY05226
LinkDB
All DBs
Position
343284..344192
Genome browser
AA seq
302 aa
AA seq
DB search
MPDRFVVHLEGRDLELSNLDKLMFPAAGFTKGEVIDYYTRIAPVLLPHLRDRPVTRIRYP
NGVDGVHFFEKNKPGGTPGWVRLATLPVPGSTKSRETIDFVVVDELPTLVWLANLAAIEL
HTPQWRIGADPDLLVVDLDPGAPAGLRECGAVAVLMRDRLAEDGITAYPKTSGKKGMQLC
CPLAGTQNAEVVAGYAKRIAEELARLVPGSITAKMAKQLRPGKIFIDWSQNNAAKTTVTP
YSLRAGAAPTASTPLTWAETEAMATGEIEARQFTPAEVLTRVETHGDLLADLREPGPPVP
HL
NT seq
909 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaccgattcgtggtgcacctggagggccgggacctggagctgtccaacctggac
aagctgatgttcccggcggccgggttcaccaagggcgaggtgatcgactactacacccgg
atcgccccggtcctgctgccgcacctgcgggaccgcccggtgacccggatccgctacccg
aacggcgtcgacggcgtgcacttcttcgagaagaacaagcccggcggcaccccgggctgg
gtgcgcctggcgacgctgccggtccccggctccacgaagagccgggagaccatcgacttc
gtcgtcgtcgacgagctgcccacgctcgtctggctggccaacctcgcggcgatcgagctg
cacaccccgcagtggcggatcggggccgacccggacctgctcgtcgtcgacctggacccg
ggggcgccggccgggctgcgggagtgcggcgcggtggcggtgctgatgcgtgatcggctc
gccgaggacgggatcacggcgtacccgaagacctcgggaaagaaggggatgcagctctgc
tgcccgctcgccggcacgcagaacgccgaggtcgtggccggttacgccaagcggatcgcc
gaggagctggcccggctggtgcccggctcgatcaccgcgaagatggccaagcagctgcgc
cccggcaagatcttcatcgactggagtcagaacaacgcggcgaagacgacggtgacgccg
tactcgttgcgggccggcgccgcgccgaccgcctcgaccccgctgacctgggccgagacc
gaggcgatggcgaccggcgagatcgaggcccgccagttcaccccggccgaggtcctgacc
cgcgtcgaaacccacggcgacctgctcgccgacctgcgcgaacccggcccacccgtgcca
catttgtga
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