Actinoplanes sp. NBRC 14428: Asp14428_42580
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Entry
Asp14428_42580 CDS
T08315
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
actr
Actinoplanes sp. NBRC 14428
Pathway
actr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
actr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Asp14428_42580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
actr03400
]
Asp14428_42580
Enzymes [BR:
actr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Asp14428_42580
DNA repair and recombination proteins [BR:
actr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Asp14428_42580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
BCJ52783
LinkDB
All DBs
Position
complement(4566740..4567642)
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AA seq
300 aa
AA seq
DB search
MPERFPVQIEGRDLELSNLDKLMYPAAGFTKGEVVDYYTRVAPVLLPHLRGRALTRIRYP
NGVDGAHFFEKNAPGGTPSWVRLETLPVPGSTKARETIDFVVVDELATLVWVANLASLEL
HTPQWRIGEHPDLMVVDLDPGAPAGLQECCAVAMLMRDRLGEDGLSAYPKTSGKKGMQLC
VPISGMQDSEAVSGYAKRVAEELSARVPGSITAKMARAIRPGKVFIDWSQNAAAKTTVAP
YSLRALAEPTASTPLTWEEVAAMALGDEPARQFGAAEVLERVDAYGDLLEDLLHPGPALP
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagcgattcccggtccagatcgagggccgcgacctcgagttgtcgaacctggac
aagctgatgtacccggccgcggggttcaccaagggcgaggtcgtcgactactacacgcgg
gtcgcgccggtgctgctgccgcacctgcgcggccgggcgctgacccggatccgctacccg
aacggcgtcgacggtgcccacttcttcgagaagaacgcgccgggcggaaccccctcctgg
gtacgcctcgagacgctgccggtgccggggtccacgaaggcgcgcgagacgatcgacttc
gtggtggtcgacgagctggccacgctcgtgtgggttgccaacctggcgtcgctggagctg
cacaccccgcagtggcggatcggcgagcaccccgacctgatggtggtggacctcgacccg
ggcgcgccggcggggcttcaggagtgctgcgcggtggcgatgctcatgcgggatcggctc
ggcgaggacgggctgagcgcgtacccgaagacgtccgggaagaagggcatgcagctgtgc
gtacccatctccggtatgcaggattcggaggcggtgtccggctacgcgaagcgggtggcg
gaggagttgtccgcgcgggtgcccggttcgatcacggcgaagatggcccgtgcgatccgg
cccggcaaggtgttcatcgactggagccagaacgcggcggcgaagacgacggtggcgccg
tactcgctgcgcgccctggcggaaccgaccgcttccacgcctctgacctgggaggaagtg
gcggcgatggcactcggggacgagcccgcgcggcagttcggcgccgcggaggtactcgag
cgcgtcgatgcgtacggtgatctgctcgaggatctgctgcaccccggaccggctctgccc
tga
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