Azotobacter chroococcum: Achr_33570
Help
Entry
Achr_33570 CDS
T03640
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
acx
Azotobacter chroococcum
Pathway
acx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
acx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Achr_33570 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
acx03019
]
Achr_33570 (rnr)
03016 Transfer RNA biogenesis [BR:
acx03016
]
Achr_33570 (rnr)
Enzymes [BR:
acx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Achr_33570 (rnr)
Messenger RNA biogenesis [BR:
acx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Achr_33570 (rnr)
Transfer RNA biogenesis [BR:
acx03016
]
Prokaryotic type
tRNA degradation factors
Achr_33570 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
LexA_DNA_bind
OB_Dis3
CSD
Motif
Other DBs
NCBI-ProteinID:
AJE22764
UniProt:
A0A0C4WQ46
LinkDB
All DBs
Position
complement(3758473..3761052)
Genome browser
AA seq
859 aa
AA seq
DB search
MADWQSLDPEAAREAEKYDNPIPSRELILKRLDERGAPASREELAEEFGLREEEQIEALR
RRLRAMERDGQLIHTRRGTYAPVDKLDLVLGRVSGHRDGFGFLIPDDGSDDLFLSPMQMR
LLFDGDRALARVSGFDRRGRREGAIVEVVSRAHETVVGRYYEEGGIGFVIPDNPKIQQEV
LVTPGRTGNATVGQFVEIRITHWPTLRFQPQGDIVEVIGNYMAPGMEIDVALRSYDIPHV
WPEAVRKEACKLKPEVEEKDKLKRIDLRHLPFVTIDGEDARDFDDAVYCEKSLLAPFAGG
YRLYVAIADVSHYVRVGSALDEEASQRGNSVYFPERVIPMLPEELSNGLCSLNPQVDRLA
MVCEMTLSRSGKMTDYQFYEAVIHSHARLTYNRVSTMLEQPKSPEGKRLCSIYAGVLPHL
KQLHSLYKVLVKARQVRGAIDFETQETRIVFGSGRKIAEILPTERNDAHKLIEECMLCAN
VATAAFLQKHELPGLYRVHDGPPAERLEKLKAFLGELGLSLHRSKDGPTPKDYQMLLESI
QGRADFHLIQTVMLRSLSQAVYSADNHGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSVI
RSKRETPHVRRAGAASMPKARIYPYDEATLEQLGEACSLTERRADEATRDVVNWLKCEFM
QDRVGERFDGVITAVTGFGIFVELKDIYVEGLVHVTALPGDYYHFDPVHHRLAGERSGRG
FRLGDSVAVRVMRVDLDERRIDFELVEGERGQPTGRRRRAAEQEEVVEERAAKGRGKGGK
GKELAPLASELLAQAEAMLGNTDVKKSRATKQALLAEAKTAKPERRKPAKGSAEKGGGGR
QHKPADKGAPRKARSKART
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcaaagtctcgatcccgaggccgcccgcgaggcggaaaagtacgataat
cccattcccagccgcgagctgatcctgaagcgcctcgacgagcgcggggctcccgccagc
cgcgaggagttggcggaggagtttggcctgcgcgaagaggagcagatcgaagccctacgc
cggcgtttgcgcgccatggagcgcgacggtcagctgatccatacccgccgcggcacctat
gcaccggtggacaagctcgacctggtgctcggccgggtcagcggacatcgggacggcttc
ggcttcctgattcccgacgatggcagcgacgacctctttctcagtccgatgcagatgcgc
ctgctgttcgacggcgaccgtgcactggcacgggtatccggcttcgaccggcggggccgc
cgcgagggggccattgtcgaggtggtctcgcgagcccatgaaaccgtcgtcggccgctac
tacgaagagggcggcatcggttttgtcatccccgacaacccgaagatccagcaggaggtg
ctggtcacccccggtcgcacggggaacgccacggtcggccagttcgtcgagatccgcatc
acccactggccgaccctgcgcttccagccgcagggcgacatcgtcgaggtgatcggcaac
tatatggcgccgggcatggaaatcgacgttgccctgcgcagctacgatatcccccacgtc
tggccggaggccgtgcgcaaggaggcgtgcaagctcaagcccgaggtggaggagaaggac
aagctcaagcgcatcgacctgcgccacctgccgttcgtcaccatcgacggtgaggatgcc
cgcgacttcgacgacgcggtttactgcgagaagagccttctggccccgttcgccggtggc
taccgcctgtatgtggcgatcgccgacgtgtcccactacgtcagggtcggctcggcgctg
gacgaggaagccagccagcgcggcaactcggtgtatttccccgagcgggtgataccgatg
ctgcccgaggagctgtccaacggcctctgctcgctcaacccgcaggttgaccggctggcc
atggtctgcgagatgaccctgtcgcgctccggcaagatgaccgattaccagttctacgag
gcggtcatccattcccatgcgcgactgacctacaaccgggtcagcaccatgctggagcag
ccgaagagccccgaaggcaagcggctgtgcagcatctatgccggggtgctgccgcatctc
aagcagctgcattcgctctataaggtgctggtgaaggcgcgccaggtgcgtggcgccatc
gatttcgagacccaggaaacacgcatcgtcttcggttccgggcgcaagatcgcggaaatc
ctgccgaccgagcgcaacgatgcgcacaaactgatcgaggagtgcatgctctgcgccaac
gtggcgaccgccgcgttcctgcagaagcacgagctgccgggactctaccgggtgcacgac
ggcccgccggcggagcgcctggagaagctcaaggcctttcttggcgagctcggcctgagt
ctgcaccgcagcaaggatggcccgacaccgaaggactaccagatgctgctggagtcgatc
caggggcgagcggacttccacctgatccagacggtcatgctgcgctcgctcagccaggcg
gtgtacagcgccgacaaccacggccacttcggcctgaactacgaggcctacacccatttc
acctcgccgatccgccgctatccggatctgctggtgcaccgtgcgatccgcagcgtgatc
cgctccaagcgcgagacgccccatgtccgccgcgcgggtgcggcgagcatgcccaaggcg
cgcatctatccctacgacgaggcgaccctggagcagctcggcgaagcctgctcgctgacc
gagcggcgtgccgacgaggcgacccgtgacgtggtcaactggttgaagtgcgagttcatg
caggatcgcgtcggcgagcgtttcgacggggtgatcaccgcggtgaccggcttcggcatc
ttcgtagagctgaaggacatctacgtcgaggggctggtgcatgtcaccgccctgccgggc
gactactatcacttcgatccggtgcatcatcgcctggccggggagcgcagcgggcgtggc
ttccggctcggcgacagcgttgccgtgcgggtgatgcgggtcgacctggacgagcggcgg
atcgatttcgagctggtcgagggcgagcgtggacagccgaccgggcgtcgtcggcgtgcc
gccgagcaggaggaggtggtcgaggagcgtgccgccaaggggcgtggcaagggcggcaag
ggcaaggagctggcgccgctggcttccgaactgctggcccaggccgaggccatgctcggc
aataccgatgtgaagaagagtcgggcgaccaagcaggcgctgctggccgaggccaagact
gccaagccggagcgccggaagccggccaaggggtccgccgagaagggcgggggcggcagg
cagcacaagccggctgacaagggggccccccgcaaggcccggagcaaggccagaacatga
DBGET
integrated database retrieval system
