Anaeromyxobacter dehalogenans 2CP-C: Adeh_0784
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Entry
Adeh_0784 CDS
T00326
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ade
Anaeromyxobacter dehalogenans 2CP-C
Pathway
ade03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ade00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Adeh_0784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ade03400
]
Adeh_0784
Enzymes [BR:
ade01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Adeh_0784
DNA repair and recombination proteins [BR:
ade03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Adeh_0784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ABC80559
UniProt:
Q2IP30
LinkDB
All DBs
Position
complement(904718..906694)
Genome browser
AA seq
658 aa
AA seq
DB search
MARAPVPTYRAQLATLVAAPPAGAGWVHETKYDGYRIGCALEGGRATLWSRRGNDWTAQF
PEVARAAEALPVRSALLDGEVAAVLPGGRTSFQALQQAFSGGRRSLAYFVFDLLWLDGED
LSRRPLLERKDALRRLLGARREVLRYAPHVDAPGAEVLREACRLGLEGIVSKRADAPYRP
GRNTTWTKAKCLARQELVIGGFTDPEGSRQGIGALLVGFHEGGALRFAGKVGTGFTQASA
RALRARLDRLERTDPPFTPRPPGALGRIAHWVRPELVAEVAFAEWTDDGKVRHPSFQGLR
EDKRAADVVRERPGAGAPPPAAASPPPQAPGAGGPARRRRPAGGPGEVVIGGVRLSHPER
LVFPGEGRTGLTKADVARYYDAVAGAMLPHLRGRPLTLFHCPQGLSGECRFMKHSKTWAP
PAVRRVRIQEKTKLGEYLIADDRAALLSLVQLDVLELHTWNATADALETPDRIVLDLDPG
PAVPWPEVVRAARLLRSALEALGLAAFVKTTGGAGLHVVTPLVPRRRWEDCLAFARGLAA
TVARHEPRAFTVAFARAGRERKILLDYLRNNRTNTSVAAFSLRARPGAPASVPVAWDELG
PRLRPERLGARTVPRRLARLGADPWAGYARAARPLADAHLAAVGAAPAAAPARGGGRR
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
gtggcccgcgcgcccgtcccgacctaccgcgcccagctcgcgaccctcgtcgcggccccg
ccggccggcgcgggctgggtgcacgagacgaagtacgacgggtatcgcatcggctgcgcg
ctcgagggcgggcgcgccacgctgtggagcaggcgcggcaacgactggaccgcgcagttc
ccggaggtggcgcgcgccgccgaggcgctcccagtgcggagcgcgctgctcgacggcgag
gtcgccgcggtgctgcccggcggccggaccagcttccaggcgctccagcaggcgttctcc
ggcgggcgccgctcgctcgcctacttcgtgttcgacctgctctggctcgacggcgaggac
ctctcccggcgcccgctgctcgagcgcaaggacgcgctgcgccggctgctcggcgcgcgc
cgcgaggtgctccgctacgcgccgcacgtggacgcgcccggcgccgaggtgctccgcgag
gcgtgccgcctcggcctggaggggatcgtctcgaagcgcgccgacgcgccgtaccggccc
gggcggaacaccacctggacgaaggcgaagtgcctcgcccgccaggagctggtgatcggc
ggcttcaccgatcccgagggcagccgccagggcatcggggcgctgctggtgggcttccac
gagggcggcgcgctgcgcttcgccgggaaggtcggcaccggcttcacgcaggcgtcggcg
cgggcgctgcgcgcgcgcctggatcgcctggagcgcaccgacccgcccttcacgccacgc
ccgcccggcgcgctcggccggatcgcgcactgggtccggccggagctggtcgccgaggtg
gcgttcgccgagtggaccgacgacgggaaggtgcgccacccgtcgttccaggggctgcgc
gaggacaagcgcgcggcggacgtcgtccgcgagcgccccggcgccggcgcgccgccgccc
gcggccgcctccccgccgccgcaggcgcccggcgccggcggccccgcgcggcggcgccgc
ccggcgggcggaccgggcgaggtggtgatcggcggcgtccgcctctcgcacccggagcgc
ctggtgttcccgggcgaggggcggaccgggctcaccaaggcggacgtggcccggtactac
gacgcggtggccggcgcgatgctgccgcacctgcgcggccggccgctcaccctgttccac
tgcccgcagggcctctccggcgagtgccgcttcatgaagcactcgaagacctgggcgccg
cccgcggtgcggcgcgttcgcatccaggagaagacgaagctgggcgagtacctgatcgcc
gacgaccgcgcggcgctgctctcgctcgtgcagctggacgtcctcgagctgcacacctgg
aacgcgaccgcggacgcgctggagacgccggaccggatcgtgctcgacctcgacccgggg
ccggcggtcccctggccggaggtggtgcgcgcggcgcggctgctgcgctcggcgctggag
gcgctggggctcgccgcgttcgtgaagaccaccggcggcgccgggctgcacgtggtgacc
ccgctcgtgccccgccggcgctgggaggactgcctcgcgttcgcgcggggcctcgccgcc
acggtggcgcgccacgagccgcgcgcgttcacggtggcgttcgcgcgcgcggggcgcgag
cggaagatcctgctcgactacctgcggaacaaccggaccaacacctcggtggcggcgttc
tcgctccgggcgcggccgggcgcgccggcgtcggtgccggtggcctgggacgagctgggg
ccgcggctgcggccggagcggctgggggcgcggacggtcccgcggcggctggcgcggctc
ggcgccgacccgtgggccgggtacgcgcgcgccgcccggccgctcgccgacgcccacctg
gccgcggtgggcgccgcgccggcggccgcgccggcgcgcggcggggggcggcggtga
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