Achromobacter denitrificans: APT56_19400
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Entry
APT56_19400 CDS
T04244
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
adt
Achromobacter denitrificans
Pathway
adt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
adt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
APT56_19400 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
adt03400
]
APT56_19400 (ligD)
Enzymes [BR:
adt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
APT56_19400 (ligD)
DNA repair and recombination proteins [BR:
adt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
APT56_19400 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ALX85184
LinkDB
All DBs
Position
complement(4371607..4374264)
Genome browser
AA seq
885 aa
AA seq
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MADTLAKYRAKRDFKVTSEPAGGGEANEAARAFVIQKHWASRLHYDFRLELDGAMKSWAV
PKGPSYDPSVKRMAVQVEDHPIAYNRFEGEIPKGQYGAGKVIIWDRGTWSPVGDPAEGYE
RGHLKFDLHGVKLRGRWALIRMKGRGSEKQPPWLLVKDRDDYARAESEFSVVDEQPDSVV
SPAAGGRPVPAAAPSAMAPPDDPPPSGQLPGEPADLPRQLKPQLATLAEGVPSQARDDWL
YEMKFDGYRLLARLDHGEVRLYTRNGHDWAPKLPHLAAALRRMPLETAWLDGEIVMLADN
GAPSFQALQNAFDGERTSGILFYVFDLPYVTGRDLRGEPLRVRRAVLARVMEAAGGDPLR
FSDAFDAAPADLVASACKMGLEGIIAKRLSSPYVSRRSDSWIKLKCARRQEFVVVGYTDP
KGARVGLGALLLAYHDEAGELVYAGKVGTGFDDAGLAALRDRLAALETRRASVDARGIGR
GTHWVRPELVAEVSFGEWTESGHVRHPVFRGLRTDKPARAITREVAMDAETTRDAGARHG
RGNTAGKAARKRSATAAKNAAGATAGKGAGTAAGKTARKTMATSAQRARTATAAGKLTHP
ERVIDPSTGLTKLDLARYYGLVAPLLLRHLKDRPVSFLRAPAGIKGEFFFQKHLEAPMPG
VKALPQALDPHHPPLMELPTPQAIMSAAQMNVVEFHTWNAVKRAIGKPDRMVFDLDPGEG
VTWDAVRRGAQLLRVLLTEIGLRAWLKTSGGKGLHVVVPLRRQYDWDTVKAFSQAIVQHL
ARTLPQVFVAKSGPKNRVGRIFADYLRNGFGATTVAAWSARARPGMGVSVPLAWEELDEV
RASDQWTIANIHERLDVGDSPWDDYAPQALGAAMKALDFKPDSGG
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
atggccgataccctggcgaagtaccgcgccaagcgcgacttcaaggtgacctcggagccg
gcgggcggcggcgaggccaacgaggccgcgcgcgccttcgtgatccagaagcactgggcc
agccgcctgcactacgacttccggctggaactggacggggccatgaagagctgggccgtg
cccaagggacccagctacgacccgtcggtcaagcgcatggcggtgcaggtcgaagaccat
cccatcgcctacaaccgcttcgagggcgagattccgaagggccagtacggcgccggcaag
gtcatcatctgggatcgcggcacctggtcgccggtgggcgatccggccgagggctacgag
cgcggccacctcaagttcgacctgcatggcgtcaagctgcgcgggcgctgggcgctgatc
cgcatgaaggggcggggatccgagaagcagccgccctggctgctggtgaaggaccgcgac
gactacgcccgcgccgaaagcgaattcagcgtggtggacgagcaacccgacagcgtggtg
tcgccagccgctggcgggcgcccggtgcccgccgccgccccatccgcgatggcgccgccc
gacgatccgccgccatccggccagctgccgggcgagccggccgacctgccgcggcagctc
aagccacagctggccacgctggcggaaggcgtgccgtcccaggcgcgggatgactggctg
tacgagatgaagttcgacggctaccggttgctggcgcggctggaccacggcgaggtgcgc
ctgtacacgcgcaacggccacgactgggcgccgaagctgccgcacctggcggcggcgctg
cggcgcatgcccttggaaaccgcatggctcgacggcgagatcgtgatgctggccgacaac
ggcgcgcccagcttccaggccttgcagaacgccttcgacggcgagcgcaccagcggcatc
ctgttctatgtgttcgacctgccttacgtgaccggccgcgatctgcgcggcgaaccgctg
cgggtgcgccgcgcggtgctggcgcgggtgatggaagccgcggggggcgaccccctgcgt
ttcagcgacgcgttcgacgcggccccggccgacctggtggcgtcggcctgcaagatgggg
ctggaaggcatcatcgccaagcgcctgtcgtcgccgtacgtatcgcggcgcagcgacagc
tggatcaagctcaagtgcgcgcggcggcaggagttcgtcgtggtcggctacaccgatccc
aagggggcgcgggtggggctgggcgcgctgctgctggcctatcacgacgaggccggcgaa
ctggtgtacgccggcaaggtgggcaccgggttcgacgacgccggactggccgcgctgcgg
gaccgcttggcggcgctggaaacacgccgggccagtgtcgacgcccgtggcatcggtcgc
ggcacgcactgggtgcggcccgagctggtggcggaagtgtcgttcggggagtggacggaa
tcgggccacgtgcgccatcccgtgttccgtgggctgcgcaccgacaagccggcgcgggcg
attaccagggaggtggcgatggacgcggagacgacgcgggacgccggggcgcggcatggc
cgcggcaacaccgcgggcaaggcggcccgcaagcgcagcgcgacagccgcgaagaatgcg
gctggcgcaacagccggcaaaggggccggaacggcggctggcaagacggcccgcaagact
atggccacgtcggcccagcgcgcaaggacggccaccgccgccggcaagctgacccatccc
gaacgcgtcatcgacccgtccaccggcttgaccaagctggacctggcccgctactacggc
ctggtggcgccgctgctgctgcgccacctgaaggaccggccggtgtcgttcctgcgcgcg
ccggcgggcatcaagggcgagttcttcttccagaagcacctggaggcgccgatgccgggc
gtgaaggcattgccgcaggccctggatccgcaccacccgcccttgatggaactgccgacg
ccgcaggcgatcatgtcggccgcgcagatgaacgtggtggagttccatacctggaacgcg
gtcaagcgcgccatcggcaagcccgaccgcatggtgttcgacctggacccgggcgagggc
gttacctgggacgcggtgcggcggggcgcgcaattgctgcgcgtgctgctgaccgagatc
ggcctgcgggcctggctcaagaccagcggcggcaagggcctgcacgtggtggtgccgctg
cgccggcaatacgactgggacacggtcaaggcgttctcgcaggctatcgtccagcatctg
gcgcgcacgctgccgcaggtgttcgtggccaagagcggtccgaagaaccgcgtcggccgg
atcttcgccgattacctgcgcaatggcttcggcgccaccacggtggcggcctggtcggcg
cgcgcgcggccggggatgggggtgtcggtgccgctggcgtgggaggaactggacgaggtc
cgggccagcgaccagtggaccatcgccaacatccatgagcgcctggatgtcggcgactcg
ccgtgggacgactacgccccgcaggcgcttggcgcggccatgaaggcgttggatttcaag
ccggattcgggcgggtag
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