Acromyrmex echinatior (Panamanian leafcutter ant): 105153398
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Entry
105153398 CDS
T03917
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
aec
Acromyrmex echinatior (Panamanian leafcutter ant)
Pathway
aec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105153398
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aec03019
]
105153398
Enzymes [BR:
aec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105153398
Messenger RNA biogenesis [BR:
aec03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105153398
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105153398
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
Motif
Other DBs
NCBI-GeneID:
105153398
NCBI-ProteinID:
XP_011066509
LinkDB
All DBs
Position
Unknown
AA seq
738 aa
AA seq
DB search
MSDKMQNIKDDGDKQNINKSINNTSYQFHGMELLPYSPALTSPFNYMPVVTSNFQPPLQP
FFQLIRNPINIDVHRLQDEYHFAHSIQQRNMLLAYKPKPSFINITPSHLFPSLSVPMIEP
APGPSSSQLHNSQLLEVVQVTKSNKNNFENVKKNKPNWTKNNKLKLLKFVAKPHNITRKL
NVDATEFKMSRNHKEKYENSNPRRMYTLMCPEDYQSGKKSHWSELEITGSIRNLSPNLWQ
MTHLTALYLNDNSLQRLPSEIGRLVSLRILDLSSNKLRSLPAEINLLLYCSRELLLNQNF
LRVLPYELGKLFQLQVLGLQGNPLSKDVMALYGNGEPTGTNKLLTYMLDNLQVTANHPPQ
RPWIPLTRPNRTRPTCIFTVMCYNVLCDKYATRQMYGYCPSWALDWEYRKKGILDEIRHY
AADIISLQEVETDQFYNFFLPELKHDGYDGIFSPKSRAKTMAENDRKYVDGCAIFYRTAK
FSLIKEHLVEFNQLAMANAEGSDNMLNRVMPKDNIGLAALLRTKEAAWDNGVPSDPAQVQ
QPILVCTAHIHWDPEFCDVKLIQTMMLSNELRSILDQAGQSFRPGHKPDSSNVQLLLCGD
FNSLPDSGVIEFLTSGRVAADHRDFKDLAYKSCLQKISGCDKPNEFTHSFKLASAYSEDI
MPYTNYTFEFKGIIDYIFYSKQSMVPLGLLGPLSPEWFKEHKVVGCPHPHVPSDHFPLLV
ELEMTPTVGTSNGLISRR
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgtccgataaaatgcagaacataaaggacgatggagacaagcaaaacataaataaatct
ataaataatacaagttaccaattccatggaatggaattacttccatattcacccgcgctt
acatcaccgtttaattacatgcctgtagttacaagtaactttcaaccaccacttcaacca
ttcttccaacttatacgaaacccgataaacatcgatgtacatcgactacaggatgaatat
cattttgcgcattctatacaacaacggaatatgttgcttgcgtataaaccaaagccatca
ttcatcaacatcacaccatctcatttgtttccatctctctcggtacccatgatagaacct
gcaccaggaccatcaagtagtcaactgcataattcacagttattggaagtggttcaagtt
acaaaaagcaataaaaacaattttgaaaatgttaaaaagaataaaccgaactggacgaag
aataataagctaaaactgttgaagtttgtagctaaacctcacaatatcacaaggaaactc
aatgtagacgctacagaatttaagatgtcccgcaatcacaaggaaaagtatgagaactcc
aacccgcgtcgtatgtatacactcatgtgccctgaggactatcaatcggggaagaaatct
cattggtcggagttggagataacaggcagtatacgaaatttgagccccaatttgtggcaa
atgactcatctaacagctctgtatctgaatgataatagtctgcaaaggttgccatctgag
atcggccgtcttgttagcttgcgtattctagatctgagtagcaataagctgcgcagtctg
cctgctgaaataaatttgttattatattgttccagggagttgttattgaaccaaaacttc
cttcgcgtgttaccatacgaactagggaagttgttccagttacaagtgctaggacttcaa
ggaaatccactcagcaaggatgtgatggcgttatatggaaatggagaacctacggggacg
aacaagctgctgacgtacatgttggacaacttacaagttacggccaatcatccgccccaa
agaccatggattccattgacgaggccgaataggacaagaccaacatgtatattcacggtg
atgtgctacaacgtgctgtgcgacaagtatgcgacgcggcagatgtacggctattgcccg
agctgggcgttggactgggagtaccgaaaaaagggtatcctcgacgagatacggcactac
gccgcggatatcatcagcctgcaggaggtcgagacggaccaattctacaacttcttcctg
ccggagctcaagcatgacggttacgacggcatattctcacccaagtcccgcgcgaagacg
atggcggagaacgatcgcaagtacgtcgacggctgcgcaattttttacaggaccgccaaa
ttttctttgataaaggagcatttagttgaattcaatcaattggcgatggcaaacgcggag
ggttcagacaacatgttaaatcgtgttatgccaaaagacaacattggattggctgcatta
cttaggactaaggaagccgcttgggataacggtgttccatctgacccggcacaggtgcaa
caaccaattttagtttgtacggcgcacattcattgggatcccgagttctgcgatgtaaaa
ctaatacagacgatgatgctaagcaatgaattacgttccattttggaccaagctggccag
tctttcagacccggccacaagcctgattcttccaacgttcaactgttgctttgtggcgac
ttcaattctttacctgattctggtgtgatcgagtttcttacatccggacgcgtggcggcc
gatcatcgtgattttaaggatttagcatataaatcgtgtttacaaaagatctctggctgc
gataaacccaacgaattcacgcattctttcaagcttgcatccgcctatagcgaggacatt
atgccctacaccaactacacatttgaatttaaaggcataatagattacattttctattcg
aaacaaagtatggtgccgctgggtctcctaggtccattgagcccagaatggtttaaagag
cataaagtggtaggatgtcctcatcctcatgttccatcggatcactttcctctgttagtg
gagttagagatgacaccgacagtaggaacaagcaacggtttgatctcacgcaggtag
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